MirGeneDB 3.0

MirGeneDB ID

Mal-Mir-142-P4-v4

Family name MIR-142 (all species)
Seed CCAUAAA
Species Asian swamp eel (Monopterus albus)
MiRBase ID
Paralogues Mal-Mir-142-P2-v1  Mal-Mir-142-P2-v2  Mal-Mir-142-P2-v3  Mal-Mir-142-P2-v4  Mal-Mir-142-P4-v1  Mal-Mir-142-P4-v2  Mal-Mir-142-P4-v3 
Orthologues Aca-Mir-142-P4-v1  Aca-Mir-142-P4-v2  Aca-Mir-142-P4-v3  Aca-Mir-142-P4-v4  Ami-Mir-142-P4-v1  Ami-Mir-142-P4-v2  Ami-Mir-142-P4-v3  Ami-Mir-142-P4-v4  Cpi-Mir-142-P4-v1  Cpi-Mir-142-P4-v2  Cpi-Mir-142-P4-v3  Cpi-Mir-142-P4-v4  Dre-Mir-142-P4-v1  Dre-Mir-142-P4-v2  Dre-Mir-142-P4-v3  Gja-Mir-142-P4-v1  Gja-Mir-142-P4-v2  Gja-Mir-142-P4-v3  Gja-Mir-142-P4-v4  Gmo-Mir-142-P4-v1  Gmo-Mir-142-P4-v2  Gmo-Mir-142-P4-v3  Gmo-Mir-142-P4-v4  Lch-Mir-142-P4  Mun-Mir-142-P4  Pbv-Mir-142-P4-v1  Pbv-Mir-142-P4-v2  Pbv-Mir-142-P4-v3  Pbv-Mir-142-P4-v4  Tni-Mir-142-P4-v1  Tni-Mir-142-P4-v2  Tni-Mir-142-P4-v3  Tni-Mir-142-P4-v4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(GCA_001952655.1_M_albus_1.0_genomic)
KV884934.1: 669471-669534 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACAAGAAGCUGCUGAUGUACAGUGUUGUCACCCAUAAAGUAGAAAGCACUACUAAACUUUACUGCACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUAUACUGUUGGCUGCGAAGGACUGUAAC
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Structure
        10          20        30        40        50        60 
ACAAGAAGCUGCUGAUGU--|      UG   C           A         UAAACUUU 
                    ACAGUGU  UCA CCAUAAAGUAG AAGCACUAC        A
                    UGUCAUA  AGU GGUAUUUCAUC UUUGUGAUG        C
CAAUGUCAGGAAGCGUCGGU^      UG   A           C         UGACACGU 
  120       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsNo
Tissue expression
 +
Fe Fe In Ma Ma
Mature sequence

Mal-Mir-142-P4-v4_5p

mirBase accessionNone
Sequence
0- CCCAUAAAGUAGAAAGCACUAC -22
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Co-mature sequence

Mal-Mir-142-P4-v4_3p

mirBase accessionNone
Sequence
42- AGUGUUUCCUACUUUAUGGAUG -64
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