Mir-142-P4-v1

MirGeneDB ID

Mal-Mir-142-P4-v1

Family name

MIR-142 (all species)

Seed

AUAAAGU

Species

Asian swamp eel (Monopterus albus)

MiRBase ID

Paralogues

Mal-Mir-142-P2-v1 Mal-Mir-142-P2-v2 Mal-Mir-142-P2-v3 Mal-Mir-142-P2-v4 Mal-Mir-142-P4-v2 Mal-Mir-142-P4-v3 Mal-Mir-142-P4-v4

Orthologues

Aca-Mir-142-P4-v1 Aca-Mir-142-P4-v2 Aca-Mir-142-P4-v3 Aca-Mir-142-P4-v4 Ami-Mir-142-P4-v1 Ami-Mir-142-P4-v2 Ami-Mir-142-P4-v3 Ami-Mir-142-P4-v4 Cpi-Mir-142-P4-v1 Cpi-Mir-142-P4-v2 Cpi-Mir-142-P4-v3 Cpi-Mir-142-P4-v4 Dre-Mir-142-P4-v1 Dre-Mir-142-P4-v2 Dre-Mir-142-P4-v3 Gja-Mir-142-P4-v1 Gja-Mir-142-P4-v2 Gja-Mir-142-P4-v3 Gja-Mir-142-P4-v4 Gmo-Mir-142-P4-v1 Gmo-Mir-142-P4-v2 Gmo-Mir-142-P4-v3 Gmo-Mir-142-P4-v4 Lch-Mir-142-P4 Mun-Mir-142-P4 Pbv-Mir-142-P4-v1 Pbv-Mir-142-P4-v2 Pbv-Mir-142-P4-v3 Pbv-Mir-142-P4-v4 Tni-Mir-142-P4-v1 Tni-Mir-142-P4-v2 Tni-Mir-142-P4-v3 Tni-Mir-142-P4-v4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(GCA_001952655.1_M_albus_1.0_genomic)

KV884934.1: 669473-669532 [+] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AAGAAGCUGCUGAUGUACAGUGUUGUCACCCAUAAAGUAGAAAGCACUACUAAACUUUACUGCACAGUGUAGUGUUUCCUACUUUAUGGAUGAGUAUACUGUUGGCUGCGAAGGACUGUA

Get precursor sequence

Structure

        10          20        30        40        50         
AAGAAGCUGCUGAUGUA--|     UG   C           A         UAAACUUU 
                   CAGUGU  UCA CCAUAAAGUAG AAGCACUAC        A
                   GUCAUA  AGU GGUAUUUCAUC UUUGUGAUG        C
AUGUCAGGAAGCGUCGGUU^     UG   A           C         UGACACGU 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Fe	Fe	In	Ma	Ma

Mature sequence

Mal-Mir-142-P4-v1_5p

mirBase accession

None

Sequence

0- CAUAAAGUAGAAAGCACUACU -21

Get sequence

Star sequence

Mal-Mir-142-P4-v1_3p*

mirBase accession

None

Sequence

39- UAGUGUUUCCUACUUUAUGGA -60

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