| MirGeneDB ID | Lch-Mir-142-P4 |
|---|---|
| Family name | MIR-142 (all species) |
| Seed | AUAAAGU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | Lch-Mir-142-P2 |
| Orthologues | Aca-Mir-142-P4-v1 Aca-Mir-142-P4-v2 Aca-Mir-142-P4-v3 Aca-Mir-142-P4-v4 Ami-Mir-142-P4-v1 Ami-Mir-142-P4-v2 Ami-Mir-142-P4-v3 Ami-Mir-142-P4-v4 Cpi-Mir-142-P4-v1 Cpi-Mir-142-P4-v2 Cpi-Mir-142-P4-v3 Cpi-Mir-142-P4-v4 Dre-Mir-142-P4-v1 Dre-Mir-142-P4-v2 Dre-Mir-142-P4-v3 Gja-Mir-142-P4-v1 Gja-Mir-142-P4-v2 Gja-Mir-142-P4-v3 Gja-Mir-142-P4-v4 Gmo-Mir-142-P4-v1 Gmo-Mir-142-P4-v2 Gmo-Mir-142-P4-v3 Gmo-Mir-142-P4-v4 Mal-Mir-142-P4-v1 Mal-Mir-142-P4-v2 Mal-Mir-142-P4-v3 Mal-Mir-142-P4-v4 Mun-Mir-142-P4 Pbv-Mir-142-P4-v1 Pbv-Mir-142-P4-v2 Pbv-Mir-142-P4-v3 Pbv-Mir-142-P4-v4 Tni-Mir-142-P4-v1 Tni-Mir-142-P4-v2 Tni-Mir-142-P4-v3 Tni-Mir-142-P4-v4 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Vertebrata |
| Genome context (LatCha1_add) |
JH127210.1: 785427-785486 [+] Ensembl |
| Precursor (pre-Mir +30nt flank) | AGGAGCUUCAAGAUGUACAGUGGAGUCAUCCAUAAAGUAGAAAGCACUACUAAACCUUUCAAUUCAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCUUCUGAUAAGAAAGGet precursor sequence |
| Structure | 10 20 30 40 50 AGGAGCUUCAAGAUGUA--| GAG A UAAACCUU CAGUG UCAUCCAUAAAGUAG AAGCACUAC U GUCAU AGUAGGUAUUUCAUC UUUGUGAUG C GAAAGAAUAGUCUUCGAGU^ GUG C UGACUUAA . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | CNNC at 3p(+17) |
| Mature sequence | Lch-Mir-142-P4_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- CAUAAAGUAGAAAGCACUACU -21
Get sequence
|
| Star sequence | Lch-Mir-142-P4_3p* (predicted) |
| mirBase accession | None |
| Sequence |
39- UAGUGUUUCCUACUUUAUGGA -60
Get sequence
|
