MirGeneDB 3.0

MirGeneDB ID

Lch-Mir-142-P4

Family name MIR-142 (all species)
Seed AUAAAGU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues Lch-Mir-142-P2 
Orthologues Aca-Mir-142-P4-v1  Aca-Mir-142-P4-v2  Aca-Mir-142-P4-v3  Aca-Mir-142-P4-v4  Ami-Mir-142-P4-v1  Ami-Mir-142-P4-v2  Ami-Mir-142-P4-v3  Ami-Mir-142-P4-v4  Cpi-Mir-142-P4-v1  Cpi-Mir-142-P4-v2  Cpi-Mir-142-P4-v3  Cpi-Mir-142-P4-v4  Dre-Mir-142-P4-v1  Dre-Mir-142-P4-v2  Dre-Mir-142-P4-v3  Gja-Mir-142-P4-v1  Gja-Mir-142-P4-v2  Gja-Mir-142-P4-v3  Gja-Mir-142-P4-v4  Gmo-Mir-142-P4-v1  Gmo-Mir-142-P4-v2  Gmo-Mir-142-P4-v3  Gmo-Mir-142-P4-v4  Mal-Mir-142-P4-v1  Mal-Mir-142-P4-v2  Mal-Mir-142-P4-v3  Mal-Mir-142-P4-v4  Mun-Mir-142-P4  Pbv-Mir-142-P4-v1  Pbv-Mir-142-P4-v2  Pbv-Mir-142-P4-v3  Pbv-Mir-142-P4-v4  Tni-Mir-142-P4-v1  Tni-Mir-142-P4-v2  Tni-Mir-142-P4-v3  Tni-Mir-142-P4-v4 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Vertebrata
Genome context
(LatCha1_add)
JH127210.1: 785427-785486 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
AGGAGCUUCAAGAUGUACAGUGGAGUCAUCCAUAAAGUAGAAAGCACUACUAAACCUUUCAAUUCAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCUUCUGAUAAGAAAG
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Structure
        10          20        30        40        50         
AGGAGCUUCAAGAUGUA--|    GAG               A         UAAACCUU 
                   CAGUG   UCAUCCAUAAAGUAG AAGCACUAC        U
                   GUCAU   AGUAGGUAUUUCAUC UUUGUGAUG        C
GAAAGAAUAGUCUUCGAGU^    GUG               C         UGACUUAA 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsCNNC at 3p(+17)
Mature sequence

Lch-Mir-142-P4_5p (predicted)

mirBase accessionNone
Sequence
0- CAUAAAGUAGAAAGCACUACU -21
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Star sequence

Lch-Mir-142-P4_3p* (predicted)

mirBase accessionNone
Sequence
39- UAGUGUUUCCUACUUUAUGGA -60
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