Mir-142-P4-v3

MirGeneDB ID

Aca-Mir-142-P4-v3

Family name

MIR-142 (all species)

Seed

GUAGUGU

Species

Green anole lizard (Anolis carolinensis)

MiRBase ID

aca-mir-142

Paralogues

Aca-Mir-142-P4-v1 Aca-Mir-142-P4-v2 Aca-Mir-142-P4-v4

Orthologues

Ami-Mir-142-P4-v1 Ami-Mir-142-P4-v2 Ami-Mir-142-P4-v3 Ami-Mir-142-P4-v4 Cpi-Mir-142-P4-v1 Cpi-Mir-142-P4-v2 Cpi-Mir-142-P4-v3 Cpi-Mir-142-P4-v4 Dre-Mir-142-P4-v1 Dre-Mir-142-P4-v2 Dre-Mir-142-P4-v3 Gja-Mir-142-P4-v1 Gja-Mir-142-P4-v2 Gja-Mir-142-P4-v3 Gja-Mir-142-P4-v4 Gmo-Mir-142-P4-v1 Gmo-Mir-142-P4-v2 Gmo-Mir-142-P4-v3 Gmo-Mir-142-P4-v4 Lch-Mir-142-P4 Mal-Mir-142-P4-v1 Mal-Mir-142-P4-v2 Mal-Mir-142-P4-v3 Mal-Mir-142-P4-v4 Mun-Mir-142-P4 Pbv-Mir-142-P4-v1 Pbv-Mir-142-P4-v2 Pbv-Mir-142-P4-v3 Pbv-Mir-142-P4-v4 Tni-Mir-142-P4-v1 Tni-Mir-142-P4-v2 Tni-Mir-142-P4-v3 Tni-Mir-142-P4-v4

Node of Origin (locus)

Gnathostomata

Node of Origin (family)

Vertebrata

Genome context
(anoCar2)

GL343287.1: 1405171-1405231 [-] UCSC Ensembl

Clustered miRNAs
(< 50kb from Mir-142-P4-v3)

Mir-142-P4-v4 GL343287.1: 1405169-1405233 [-] UCSC Ensembl
Mir-142-P4-v1 GL343287.1: 1405171-1405231 [-] UCSC Ensembl
Mir-142-P4-v2 GL343287.1: 1405171-1405231 [-] UCSC Ensembl
Mir-142-P4-v3 GL343287.1: 1405171-1405231 [-] UCSC Ensembl

Precursor
(pre-Mir +30nt flank)

AGCUGUAUUUUUAAGGACAGUGGACUCAUCCAUAAAGUAGAAAGCACUACUAAACGCCUGUGCCCAAGUGUAGUGUUUCCUACUUUAUGGAUGAGUGUACUGUGAGCAACGGAGGCAACAC

Get precursor sequence

Structure

        10          20        30        40        50          
AGCUGUAUUUUUAAGGA--|    G                 A         UAAACGCCU 
                   CAGUG ACUCAUCCAUAAAGUAG AAGCACUAC         \
                   GUCAU UGAGUAGGUAUUUCAUC UUUGUGAUG         G
CACAACGGAGGCAACGAGU^    G                 C         UGAACCCGU 
 .       110       100        90        80        70

Deep sequencing

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3' NTU

Motifs

CNNC at 3p(+17)

Tissue expression

Sk	Ta	Ta	To	Wh

Star sequence

Aca-Mir-142-P4-v3_5p*

mirBase accession

MIMAT0021767

Sequence

0- CAUAAAGUAGAAAGCACUACUAA -23

Get sequence

Mature sequence

Aca-Mir-142-P4-v3_3p

mirBase accession

MIMAT0021768

Sequence

38- UGUAGUGUUUCCUACUUUAUGGA -61

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