MirGeneDB ID | Bge-Mir-2-P2 |
Family name |
MIR-2 (all species) |
Seed |
AUCACAG |
Species |
Cockroach (Blattella germanica) |
MiRBase ID |
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Paralogues |
Bge-Mir-2-P1-v1
Bge-Mir-2-P1-v2
Bge-Mir-2-P3
Bge-Mir-2-P4c-v1
Bge-Mir-2-P4c-v2
Bge-Mir-2-P4d-v1
Bge-Mir-2-P4d-v2
Bge-Mir-2-P7
|
Orthologues |
Aae-Mir-2-P2
Csc-Mir-2-P2o
Dan-Mir-2-P2a
Dan-Mir-2-P2b1
Dan-Mir-2-P2b2
Dma-Mir-2-o2
Dma-Mir-2-P2
Dme-Mir-2-P2a
Dme-Mir-2-P2b1
Dme-Mir-2-P2b2
Dmo-Mir-2-P2a
Dmo-Mir-2-P2b1
Dmo-Mir-2-P2b2
Dpu-Mir-2-o2
Dpu-Mir-2-P2
Dsi-Mir-2-P2a
Dsi-Mir-2-P2b1
Dsi-Mir-2-P2b2
Dya-Mir-2-P2a
Dya-Mir-2-P2b1
Dya-Mir-2-P2b2
Hme-Mir-2-P2c
Hme-Mir-2-P2d
Lpo-Mir-2-P2g
Lpo-Mir-2-P2h
Lpo-Mir-2-P2j
Lpo-Mir-2-P2l
Lpo-Mir-2-P2m
Tca-Mir-2-P2e
Tca-Mir-2-P2f
|
Node of Origin (locus) |
Arthropoda
|
Node of Origin (family) |
Protostomia
|
Genome context (Bger_2.0) |
KZ615136.1: 496274-496334 [+]
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CUGCUUUCCAAUAACAUUCCGUUGCACUGGUCGUCAAUUUGGUUGUGAAAUGUUGUAUUAAAAAUUCAUAUCACAGCCACUUUGAUGAGCUAGUUUUUCGGACCAUUCACCUGGAGAUCUG
Get precursor sequence
|
Structure | 10 20 30 40 50
CUGCUUUCCAAUAACAU-- UUGC -| UU A UUGUAU
UCCG ACUGG UCGUCAA UGGUUGUGA AUG U
AGGC UGAUC AGUAGUU ACCGACACU UAC A
GUCUAGAGGUCCACUUACC UUUU G^ UC A UUAAAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | CNNC at 3p(+17) |
Tissue expression
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Ad |
Ad |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ny |
Ov |
Co |
Co |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
Em |
No |
No |
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Star sequence |
Bge-Mir-2-P2_5p* |
mirBase accession | None |
Sequence |
0- UCGUCAAUUUGGUUGUGAAAUG -22
Get sequence
|
Mature sequence |
Bge-Mir-2-P2_3p |
mirBase accession | None |
Sequence |
38- UAUCACAGCCACUUUGAUGAGCU -61
Get sequence
|