Mir-10-P4-o2

MirGeneDB ID

Bko-Mir-10-P4-o2

Family name

MIR-10 (all species)

Seed

AAGCUCG

Species

Monogonont Rotifer 2 (Brachionus koreanus)

MiRBase ID

Paralogues

Bko-Mir-10-P2 Bko-Mir-10-P3

Orthologues

Aae-Mir-10-P4 Adi-Mir-10 Aga-Mir-10-P4 Asp-Mir-10 Asu-Mir-10-P4 Ava-Mir-10-P4 Bge-Mir-10-P4 Bpl-Mir-10-P4 Csc-Mir-10-P4q Csc-Mir-10-P4r Cte-Mir-10-P4 Dan-Mir-10-P4 Dgr-Mir-10-P4 Dlo-Mir-10-P4-v1 Dlo-Mir-10-P4-v2 Dma-Mir-10-P4 Dme-Mir-10-P4 Dmo-Mir-10-P4 Dpu-Mir-10-P4 Dsi-Mir-10-P4 Dya-Mir-10-P4 Efe-Mir-10-P4a Efe-Mir-10-P4b Efe-Mir-10-P4c Gpa-Mir-10-P4 Gsa-Mir-10-P4 Hme-Mir-10-P4 Isc-Mir-10-P4 Lan-Mir-10-P4d Lan-Mir-10-P4e Llo-Mir-10-P4-v1 Llo-Mir-10-P4-v2 Lpo-Mir-10-P4j Lpo-Mir-10-P4k Lpo-Mir-10-P4l Lpo-Mir-10-P4m Lpo-Mir-10-P4n Nve-Mir-10 Ofu-Mir-10-P4 Pca-Mir-10-P4 Pcr-Mir-10-P4s1 Pcr-Mir-10-P4s2 Pcr-Mir-10-P4t Pdu-Mir-10-P4 Pdu-Mir-10-P4-as Snu-Mir-10-P4 Tca-Mir-10-P4 Tur-Mir-10-P4u Tur-Mir-10-P4v Tur-Mir-10-P4w

Node of Origin (locus)

B. koreanus

Node of Origin (family)

Eumetazoa

Genome context
(Brachionus_koreanusGCA_016987375.1_Bk_v0.5.4_genom)

PJRA01000412.1: 2712167-2712226 [+] Ensembl

Precursor
(pre-Mir +30nt flank)

AAUAAAAAAUUUUGAAUUCUUUUGGAAUUGCCUUCGUAAAACGAGAUUUUGUAGUUUUGAUUUUUCCAAAAGCUCGUUGAUACGAAGGUUAAAUACAAAAGUUAUCGUUCCAUCAGAUCA

Get precursor sequence

Structure

        10         20         30         40        50         
AAUAAAAAAUUUUGAAUU-      GAAUU-         A-|     A     UAGUUUU 
                   CUUUUG      GCCUUCGUA  AACGAG UUUUG       \
                   GAAAAC      UGGAAGCAU  UUGCUC AAAAC       G
ACUAGACUACCUUGCUAUU      AUAAAU         AG^     G     CUUUUUA 
.       110       100        90        80        70        60

Deep sequencing

Go to detailed chart

3' NTU

Motifs

Tissue expression

Bk	Bk	Bk

Star sequence

Bko-Mir-10-P4-o2_5p* (predicted)

mirBase accession

None

Sequence

0- CCUUCGUAAAACGAGAUUUUG -21

Get sequence

Mature sequence

Bko-Mir-10-P4-o2_3p

mirBase accession

None

Sequence

38- AAAGCUCGUUGAUACGAAGGUU -60

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