MirGeneDB 3.0
MirGeneDB ID

Loc-Mir-1388

Family name MIR-1388 (all species)
Seed GGACUGU
Species Spotted gar (Lepisosteus oculatus)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Eca-Mir-1388-as  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(LepOcu1)		 LG18: 10114028-10114088 [+] Ensembl
Precursor
(pre-Mir +30nt flank)
CGUGCAGCUGUCGUUCAGAGAGGUGUUUCCAGGACUGUCUAACCUGAGAAUGGUAAAAUCAAUGCUCAAUCUCAGGUUCGUCAGCCCAUGAAACGCUUUCUCAAUUAAACAAGACAUUGCA
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Structure
        10          20         30        40        50         
CGUGCAGCUGUCGUUCA--   -|        CA  A   UCU         A  GUAAAA 
                   GAG AGGUGUUUC  GG CUG   AACCUGAGA UG      U
                   CUC UUCGCAAAG  CC GAC   UUGGACUCU AC      C
ACGUUACAGAACAAAUUAA   U^        UA  C   UGC         A  UCGUAA 
 .       110       100        90        80        70        60
Deep sequencing
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CommentCheck 5p 3' end
3' NTU No
MotifsNo
Tissue expression
-   +
Br Br He He He He Ov Ov Ov Ov Te Te Te Te To
Mature sequence

Loc-Mir-1388_5p
mirBase accessionNone
Sequence 
0- AGGACUGUCUAACCUGAGAAUG -22
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Star sequence

Loc-Mir-1388_3p*
mirBase accessionNone
Sequence 
38- AUCUCAGGUUCGUCAGCCCAUGA -61
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