MirGeneDB 3.0
MirGeneDB ID

Ete-Mir-1388

Family name MIR-1388 (all species)
Seed GGACUGU
Species Lesser hedgehog tenrec (Echinops telfairi)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Eca-Mir-1388-as  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(echTel2)		 JH980408: 215220-215275 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CUCUCAGCAGGGCCCCUGGGCAGUGCCCCCCGGACUGUCGCCCCUGAGAACGUGAGGCUGCAGGCUCUCAGGCCCGUCAGCCCGUGAGGCGCCGCCCUCUGCAACCAUGACCUCUC
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Structure
        10          20        30        40        50       
CUCUCAGCAGGGCCCCU--|   A     CCC   A   U  CC       ACGUGAG 
                   GGGC GUGCC   CGG CUG CG  CCUGAGA       G
                   CCCG CGCGG   GCC GAC GC  GGACUCU       C
CUCUCCAGUACCAACGUCU^   C     AGU   C   U  CC       CGGACGU 
    110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
To
Mature sequence

Ete-Mir-1388_5p
mirBase accessionNone
Sequence 
0- CGGACUGUCGCCCCUGAGAACG -22
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Star sequence

Ete-Mir-1388_3p*
mirBase accessionNone
Sequence 
34- CUCUCAGGCCCGUCAGCCCGUG -56
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