MirGeneDB 3.0
MirGeneDB ID

Bta-Mir-1388

Family name MIR-1388 (all species)
Seed GGACUGU
Species Cow (Bos taurus)
MiRBase ID bta-mir-1388
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Eca-Mir-1388-as  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCF_002263795.1_ARS-UCD1.2_BTA)		 NC_037340.1: 53904040-53904100 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCCCCGUCAGCCGCCUGGGCGGUGCCUUCAGGACUGUCCAACCUGAGAAUGGUGAGCAUCCAGGGACAAUCUCAGGUUUGUCAGCCCGCAAGGUGCCGUCCCCUCCCCAGCAGCAGCAAG
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Structure
        10          20        30        40        50          
AGCCCCGUCAGCCGCCU--|     UG    CA  A   UCC         A  GUGAGCA 
                   GGGCGG  CCUU  GG CUG   AACCUGAGA UG       \
                   CCUGCC  GGAA  CC GAC   UUGGACUCU AC       U
GAACGACGACGACCCCUCC^     GU    CG  C   UGU         A  AGGGACC 
 .       110       100        90        80        70
Deep sequencing
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3' NTU Yes
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Ad Bo Br Ce Co Co De Fe He Hy Ir Ki La Lo Mi No Op Or Pe Re Su Te
Mature sequence

Bta-Mir-1388_5p
mirBase accessionMIMAT0013590
Sequence 
0- AGGACUGUCCAACCUGAGAAUG -22
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Proposed targets TargetScanVert: bta-miR-1388-5p
Star sequence

Bta-Mir-1388_3p*
mirBase accessionMIMAT0013591
Sequence 
39- AUCUCAGGUUUGUCAGCCCGCA -61
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Proposed targets TargetScanVert: bta-miR-1388-3p