MirGeneDB ID | Cpo-Mir-1388 |
Family name |
MIR-1388 (all species) |
Seed |
GGACUGU |
Species |
Guinea pig (Cavia porcellus) |
MiRBase ID |
cpo-mir-1388
|
Paralogues |
|
Orthologues |
Aca-Mir-1388
Ami-Mir-1388
Bta-Mir-1388
Cfa-Mir-1388
Cli-Mir-1388
Cmi-Mir-1388
Cpi-Mir-1388
Dno-Mir-1388
Dre-Mir-1388
Eca-Mir-1388
Eca-Mir-1388-as
Ete-Mir-1388
Gga-Mir-1388
Gja-Mir-1388
Gmo-Mir-1388
Laf-Mir-1388
Lch-Mir-1388
Loc-Mir-1388
Mal-Mir-1388
Mdo-Mir-1388
Mmr-Mir-1388
Mun-Mir-1388
Oan-Mir-1388-v1
Oan-Mir-1388-v2
Pbv-Mir-1388
Sha-Mir-1388
Spt-Mir-1388
Sto-Mir-1388
Tgu-Mir-1388
Tni-Mir-1388
Xla-Mir-1388-P1
Xla-Mir-1388-P2
Xtr-Mir-1388
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Gnathostomata
|
Genome context (cavPor3) |
scaffold_119: 424300-424359 [+]
UCSC
|
Precursor (pre-Mir +30nt flank) |
UUCUGCCAGCUGUCCCUGGGUGGUGUCUCCAGGACUGUCCAACCUGAGAAUGUUGCAUCUCCUGGUCAAUCUCAGGUUUGUCAGCCCGUGAGGUGCUGCCCCUUCCCCAGCAUCAGCUGU
Get precursor sequence
|
Structure | 10 20 30 40 50
UUCUGCCAGCUGUCCCU--| UG UG CA A UCC A UUGCAU
GGG G UCUC GG CUG AACCUGAGA UG C
CCC C GGAG CC GAC UUGGACUCU AC U
UGUCGACUACGACCCCUUC^ GU GU UG C UGU A UGGUCC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17) |
Tissue expression
|
Bl |
Bl |
Bl |
Bl |
Oo |
Oo |
Oo |
Oo |
To |
Wh |
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Mature sequence |
Cpo-Mir-1388_5p |
mirBase accession | MIMAT0047425 |
Sequence |
0- AGGACUGUCCAACCUGAGAAUG -22
Get sequence
|
Star sequence |
Cpo-Mir-1388_3p* |
mirBase accession | MIMAT0047426 |
Sequence |
38- AUCUCAGGUUUGUCAGCCCGUG -60
Get sequence
|