MirGeneDB 3.0
MirGeneDB ID

Gga-Mir-1388

Family name MIR-1388 (all species)
Seed GGACUGU
Species Chicken (Gallus gallus)
MiRBase ID gga-mir-1388a
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Eca-Mir-1388-as  Ete-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(Gallus_gallus.GRCg6a)		 20: 9510195-9510255 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GCGGCGGCUGCCCGAGCGAGGGGCACCUCGAGGACUGUCUAACCUGAGAAUGGUGAAACAUGAGGGUCAAUCUCAGGUUCGUCAGCCCAUGAGAUGCCUUCUCCAGAGCGGGAUGGGCAGC
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Structure
        10         20         30        40        50          
GCGGCGGCUGCCCGAGC-   -|    C    A  A   UCU         A  GUGAAAC 
                  GAG GGGCA CUCG GG CUG   AACCUGAGA UG       \
                  CUC UCCGU GAGU CC GAC   UUGGACUCU AC       A
CGACGGGUAGGGCGAGAC   U^    A    A  C   UGC         A  UGGGAGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Ad Ad Ad Br Br Ce Ce Ce Ce Gg He He Hy Hy Ki Ki Li Li Lu Lu Ov Pr Pr Sc Sc Sp Sp Te
Mature sequence

Gga-Mir-1388_5p
mirBase accessionMIMAT0037555
Sequence 
0- AGGACUGUCUAACCUGAGAAUG -22
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Star sequence

Gga-Mir-1388_3p*
mirBase accessionMIMAT0037556
Sequence 
39- AUCUCAGGUUCGUCAGCCCAUG -61
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