MirGeneDB ID | Cmi-Mir-1388 |
Family name |
MIR-1388 (all species) |
Seed |
GGACUGU |
Species |
Australian ghostshark (Callorhinchus milii) |
MiRBase ID |
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Paralogues |
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Orthologues |
Aca-Mir-1388
Ami-Mir-1388
Bta-Mir-1388
Cfa-Mir-1388
Cli-Mir-1388
Cpi-Mir-1388
Cpo-Mir-1388
Dno-Mir-1388
Dre-Mir-1388
Eca-Mir-1388
Eca-Mir-1388-as
Ete-Mir-1388
Gga-Mir-1388
Gja-Mir-1388
Gmo-Mir-1388
Laf-Mir-1388
Lch-Mir-1388
Loc-Mir-1388
Mal-Mir-1388
Mdo-Mir-1388
Mmr-Mir-1388
Mun-Mir-1388
Oan-Mir-1388-v1
Oan-Mir-1388-v2
Pbv-Mir-1388
Sha-Mir-1388
Spt-Mir-1388
Sto-Mir-1388
Tgu-Mir-1388
Tni-Mir-1388
Xla-Mir-1388-P1
Xla-Mir-1388-P2
Xtr-Mir-1388
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Gnathostomata
|
Genome context (GCA_000165045.2_Callorhinchus_milii-6.1.3) |
KI635860.1: 571722-571781 [-]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
CCUUGAACGGCAGGAUUGAGAGGUGCCUCAAGGACUGUCUAACCUGAGAAUGGUGAAGAUAAAGGUCAAUCUCAGGUUCGUCAGCCCAUGAAACACUUCUCGUUUGCUUAGAAAAUUGCA
Get precursor sequence
|
Structure | 10 20 30 40 50
CCUUGAACGGCAGGAUU--| CC A A UCU A UGAAG
GAGAGGUG UCA GG CUG AACCUGAGA UGG A
CUCUUCAC AGU CC GAC UUGGACUCU ACU U
ACGUUAAAAGAUUCGUUUG^ AA A C UGC A GGAAA
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
Comment | There is a second Dicer cut -1 on both arms. |
3' NTU |
No
|
Motifs | UG at 5p(-14) |
Tissue expression
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Bl |
Br |
Ey |
Gi |
He |
In |
Ki |
Li |
Mu |
Ov |
Pa |
Re |
Sk |
Sp |
Te |
Ut |
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Mature sequence |
Cmi-Mir-1388_5p |
mirBase accession | None |
Sequence |
0- AGGACUGUCUAACCUGAGAAUGG -23
Get sequence
|
Star sequence |
Cmi-Mir-1388_3p* |
mirBase accession | None |
Sequence |
37- AAUCUCAGGUUCGUCAGCCCAUG -60
Get sequence
|