MirGeneDB 2.1
MirGeneDB ID

Cmi-Mir-1388

Family name MIR-1388 (all species)
Seed GGACUGU
Species Australian ghostshark (Callorhinchus milii)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_000165045.2_Callorhinchus_milii-6.1.3)		 KI635860.1: 571722-571781 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
CCUUGAACGGCAGGAUUGAGAGGUGCCUCAAGGACUGUCUAACCUGAGAAUGGUGAAGAUAAAGGUCAAUCUCAGGUUCGUCAGCCCAUGAAACACUUCUCGUUUGCUUAGAAAAUUGCA
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Structure
        10          20        30        40        50         
CCUUGAACGGCAGGAUU--|       CC   A  A   UCU         A   UGAAG 
                   GAGAGGUG  UCA GG CUG   AACCUGAGA UGG     A
                   CUCUUCAC  AGU CC GAC   UUGGACUCU ACU     U
ACGUUAAAAGAUUCGUUUG^       AA   A  C   UGC         A   GGAAA 
.       110       100        90        80        70        60
Deep sequencing
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CommentThere is a second Dicer cut -1 on both arms.
3' NTU No
MotifsUG at 5p(-14)
Tissue expression
-   +
Bl Br Ey Gi Gl He In Ki Li Mu Ov Pa Sk Sp Te Ut
Mature sequence

Cmi-Mir-1388_5p
mirBase accessionNone
Sequence 
0- AGGACUGUCUAACCUGAGAAUGG -23
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Star sequence

Cmi-Mir-1388_3p*
mirBase accessionNone
Sequence 
37- AAUCUCAGGUUCGUCAGCCCAUG -60
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