MirGeneDB 3.0
MirGeneDB ID

Sha-Mir-1388

Family name MIR-1388 (all species)
Seed UCUCAGG
Species Tasmanian devil (Sarcophilus harrisii)
MiRBase ID sha-mir-352
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Eca-Mir-1388-as  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(DEVIL_add)		 GL834659.1: 2574302-2574361 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGCAGUUUGGAAGCAAUGGAAGGUGCAUCUAGGACUGUCUAACCUGAGAAUGGUGAAUCUCAGGGUCAAUCUCAGGUUUGUCAGCCCAUGAGGUGCCUUCUCUAGACCUCGAAUCCCGGA
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Structure
        10          20        30        40        50         
AGCAGUUUGGAAGCAAU--|     UG A  UA  A   UCU         A  GUGAAU 
                   GGAAGG  C UC  GG CUG   AACCUGAGA UG      C
                   UCUUCC  G AG  CC GAC   UUGGACUCU AC      U
AGGCCCUAAGCUCCAGAUC^     GU G  UA  C   UGU         A  UGGGAC 
.       110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
Bo Br He Ki Li Ly Pa Sk Sp Te
Star sequence

Sha-Mir-1388_5p*
mirBase accessionNone
Sequence 
0- AGGACUGUCUAACCUGAGAAUG -22
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Mature sequence

Sha-Mir-1388_3p
mirBase accessionMIMAT0022772
Sequence 
38- AUCUCAGGUUUGUCAGCCCAUG -60
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