MirGeneDB ID | Eca-Mir-1388 |
Family name |
MIR-1388 (all species) |
Seed |
GGACUGU |
Species |
Horse (Equus caballus) |
MiRBase ID |
eca-mir-1388
|
Paralogues |
Eca-Mir-1388-as
|
Orthologues |
Aca-Mir-1388
Ami-Mir-1388
Bta-Mir-1388
Cfa-Mir-1388
Cli-Mir-1388
Cmi-Mir-1388
Cpi-Mir-1388
Cpo-Mir-1388
Dno-Mir-1388
Dre-Mir-1388
Ete-Mir-1388
Gga-Mir-1388
Gja-Mir-1388
Gmo-Mir-1388
Laf-Mir-1388
Lch-Mir-1388
Loc-Mir-1388
Mal-Mir-1388
Mdo-Mir-1388
Mmr-Mir-1388
Mun-Mir-1388
Oan-Mir-1388-v1
Oan-Mir-1388-v2
Pbv-Mir-1388
Sha-Mir-1388
Spt-Mir-1388
Sto-Mir-1388
Tgu-Mir-1388
Tni-Mir-1388
Xla-Mir-1388-P1
Xla-Mir-1388-P2
Xtr-Mir-1388
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Gnathostomata
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Genome context (GCA_002863925.1_EquCab3.0) |
CM009169.1: 50627508-50627568 [-]
UCSC
Ensembl
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Precursor (pre-Mir +30nt flank) |
CUCCACCGGUCGCCCUUGGGCAGUGACUCCAGGACUGUCCAACCUGAGAAUGGUGAGUCUCCAGGGUCGUUCUCAGGUUCGUCAGCCCAUGAGAUGCUGCCCCUUCCCCAGCAGUGGCUGC
Get precursor sequence
|
Structure | 10 20 30 40 50
CUCCACCGGUCGCCCUU--| A CA A UCC GUGAGUC
GGGCAGUG CUC GG CUG AACCUGAGAAUG \
CCCGUCGU GAG CC GAC UUGGACUCUUGC U
CGUCGGUGACGACCCCUUC^ A UA C UGC UGGGACC
. 110 100 90 80 70 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
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Ps |
Bo |
Ca |
Em |
En |
En |
En |
En |
En |
En |
En |
Gl |
He |
He |
Ho |
Im |
Ki |
Li |
Lo |
Lu |
Ma |
Ma |
Mi |
Pl |
Sp |
Te |
Tr |
Ut |
Ut |
Yo |
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Mature sequence |
Eca-Mir-1388_5p |
mirBase accession | MIMAT0034496 |
Sequence |
0- AGGACUGUCCAACCUGAGAAUG -22
Get sequence
|
Co-mature sequence |
Eca-Mir-1388_3p |
mirBase accession | None |
Sequence |
39- UUCUCAGGUUCGUCAGCCCAUG -61
Get sequence
|