MirGeneDB 3.0
MirGeneDB ID

Ami-Mir-1388

Family name MIR-1388 (all species)
Seed GGACUGU
Species American alligator (Alligator mississippiensis)
MiRBase ID ami-mir-1388
Paralogues
Orthologues Aca-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Eca-Mir-1388-as  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCF_000281125.3_ASM28112v4_AMI_add)		 NW_017711743.1: 954514-954574 [+] UCSC
Precursor
(pre-Mir +30nt flank)
CCGGGCCGCUGCCAAGUGAGGGGCGUCCCCAGGACUGUCUAACCUGAGAAUGGUGAAACACGAGGGUCAAUCUCAGGUUCGUCAGCCCAUGAGACGCUCUCUCCAGAGCCGAAGGGCAGCA
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Structure
        10         20         30         40        50          
CCGGGCCGCUGCCAAGU-   -|      CC  -  A   UCU         A  GUGAAAC 
                  GAG GGGCGUC  CA GG CUG   AACCUGAGA UG       \
                  CUC CUCGCAG  GU CC GAC   UUGGACUCU AC       A
ACGACGGGAAGCCGAGAC   U^      A-  A  C   UGC         A  UGGGAGC 
 .       110       100         90        80        70
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
To
Mature sequence

Ami-Mir-1388_5p
mirBase accessionMIMAT0038312
Sequence 
0- AGGACUGUCUAACCUGAGAAUG -22
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Star sequence

Ami-Mir-1388_3p*
mirBase accessionMIMAT0038313
Sequence 
39- AUCUCAGGUUCGUCAGCCCAUG -61
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