MirGeneDB 3.0
MirGeneDB ID

Laf-Mir-1388

Family name MIR-1388 (all species)
Seed UCUCAGG
Species African bush elephant (Loxodonta africana)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Eca-Mir-1388-as  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(GCA_000001905.1_Loxafr3.0)		 GL010148.1: 341799-341856 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCUCCGCCCAGACCUUGGGCAGUGCCUCCAGGACUGUCCGACCUGAGAAUGCCAGGCUCCAGGCUCAAUCUCAGGUCCGUCAGCCCGAGAGGUGCUGCCCUACCCCGACAGCGACCG
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Structure
        10        20        30        40        50         
GGCUCCGCCCAGACCUUG|    UG    CA  A   UCC         A  CCAGGC 
                  GGCAG  CCUC  GG CUG   GACCUGAGA UG      U
                  CCGUC  GGAG  CC GAC   CUGGACUCU AC      C
GCCAGCGACAGCCCCAUC^    GU    AG  C   UGC         A  UCGGAC 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsUG at 5p(-14), CNNC at 3p(+17)
Tissue expression
-   +
Wh
Star sequence

Laf-Mir-1388_5p*
mirBase accessionNone
Sequence 
0- AGGACUGUCCGACCUGAGAAUG -22
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Mature sequence

Laf-Mir-1388_3p
mirBase accessionNone
Sequence 
38- AUCUCAGGUCCGUCAGCCCG -58
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