MirGeneDB 3.0
MirGeneDB ID

Tni-Mir-1388

Family name MIR-1388 (all species)
Seed UCUCAGG
Species Pufferfish (Tetraodon nigroviridis)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Eca-Mir-1388-as  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(Tetraodon_nigroviridis.TETRAODON8.dna.toplevel)		 9: 5786618-5786676 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
ACACUUUCAAACUCUUCUGUGGUUCUUUCUAGGACUGUCCAACCUGAGAAUGUUGGAUUUGGGUUCAAUCUCAGGUUCGUCAGCCCAUGAAACACUAACAAUAUUUCACCAGAAAGAAA
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Structure
        10           20        30        40        50         
ACACUUUCAAACUCUUC--  -|   UC    UA  A   UCC         A  UUGGAU 
                   UG UGGU  UUUC  GG CUG   AACCUGAGA UG      \
                   AC AUCA  AAAG  CC GAC   UUGGACUCU AC      U
AAAGAAAGACCACUUUAUA  A^   C-    UA  C   UGC         A  UUGGGU 
       110       100         90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Sp Sp Sp To
Star sequence

Tni-Mir-1388_5p*
mirBase accessionNone
Sequence 
0- AGGACUGUCCAACCUGAGAAUG -22
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Mature sequence

Tni-Mir-1388_3p
mirBase accessionNone
Sequence 
37- AUCUCAGGUUCGUCAGCCCAUG -59
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