MirGeneDB 3.0
MirGeneDB ID

Cfa-Mir-1388

Family name MIR-1388 (all species)
Seed GGACUGU
Species Dog (Canis familiaris)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Eca-Mir-1388-as  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(canFam3_add)		 chr24: 47411218-47411275 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
GGCCUCGCCGCGGGCCCGGGCGGCGCCUCCAGGACUGUCCAACCUGAGAGUGUGUCCCCGCGGUCAGUCUCAGGUUCGUCAGCCCGAGAGGUGCCGCCCCUUCCCCGCGGCGGCCGCU
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Structure
        10          20        30        40        50        
GGCCUCGCCGCGGGCCC--|           CA  A   UCC         G  UGUCC 
                   GGGCGGCGCCUC  GG CUG   AACCUGAGA UG     C
                   CCCGCCGUGGAG  CC GAC   UUGGACUCU AC     C
UCGCCGGCGGCGCCCCUUC^           AG  C   UGC         G  UGGCG 
      110       100        90        80        70        60
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17), UGUG in loop
Tissue expression
-   +
An An An Bl Ce Co He Hi Hi Hy Ki Ki Li Lu Ov Sk Te Te
Mature sequence

Cfa-Mir-1388_5p
mirBase accessionNone
Sequence 
0- AGGACUGUCCAACCUGAGAGUG -22
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Star sequence

Cfa-Mir-1388_3p*
mirBase accessionNone
Sequence 
36- GUCUCAGGUUCGUCAGCCCGAG -58
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