MirGeneDB ID | Mdo-Mir-1388 |
Family name |
MIR-1388 (all species) |
Seed |
GGACUGU |
Species |
Gray short-tailed opossum (Monodelphis domestica) |
MiRBase ID |
mdo-mir-352
|
Paralogues |
|
Orthologues |
Aca-Mir-1388
Ami-Mir-1388
Bta-Mir-1388
Cfa-Mir-1388
Cli-Mir-1388
Cmi-Mir-1388
Cpi-Mir-1388
Cpo-Mir-1388
Dno-Mir-1388
Dre-Mir-1388
Eca-Mir-1388
Eca-Mir-1388-as
Ete-Mir-1388
Gga-Mir-1388
Gja-Mir-1388
Gmo-Mir-1388
Laf-Mir-1388
Lch-Mir-1388
Loc-Mir-1388
Mal-Mir-1388
Mmr-Mir-1388
Mun-Mir-1388
Oan-Mir-1388-v1
Oan-Mir-1388-v2
Pbv-Mir-1388
Sha-Mir-1388
Spt-Mir-1388
Sto-Mir-1388
Tgu-Mir-1388
Tni-Mir-1388
Xla-Mir-1388-P1
Xla-Mir-1388-P2
Xtr-Mir-1388
|
Node of Origin (locus) |
Gnathostomata
|
Node of Origin (family) |
Gnathostomata
|
Genome context (monDom5_add) |
1: 472807067-472807126 [+]
UCSC
Ensembl
|
Precursor (pre-Mir +30nt flank) |
AGUGGUUUGGAAGCAAUGGAAGGUGCAUCUAGGACUGUCUAACCUGAGAAUGGUGAAUCUCAGGGUCAAUCUCAGGUUUGUCAGCCCAUGAGGUGCCUUCCCCAGACCUCCAAUCCCAGA
Get precursor sequence
|
Structure | 10 20 30 40 50
AGUGGUUUGGAAGCAAU--| UG A UA A UCU A GUGAAU
GGAAGG C UC GG CUG AACCUGAGA UG C
CCUUCC G AG CC GAC UUGGACUCU AC U
AGACCCUAACCUCCAGACC^ GU G UA C UGU A UGGGAC
. 110 100 90 80 70 60 |
Deep sequencing |
Go to detailed chart
|
3' NTU |
No
|
Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
Tissue expression
|
|
Mature sequence |
Mdo-Mir-1388_5p |
mirBase accession | MIMAT0050134 |
Sequence |
0- AGGACUGUCUAACCUGAGAAUG -22
Get sequence
|
Star sequence |
Mdo-Mir-1388_3p* |
mirBase accession | MIMAT0050135 |
Sequence |
38- AUCUCAGGUUUGUCAGCCCAUG -60
Get sequence
|