MirGeneDB 3.0
MirGeneDB ID

Cli-Mir-1388

Family name MIR-1388 (all species)
Seed GGACUGU
Species Rock pigeon (Columba livia)
MiRBase ID cli-mir-1388
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Eca-Mir-1388-as  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(colLiv2)		 scaffold36: 1588269-1588329 [-]
Precursor
(pre-Mir +30nt flank)
UCGGCGGCUGCCCAAGCGAGAGGCACCUCGAGGACUGUCUAACCUGAGAAUGGUGAAAUGUAAGGGUCAAUCUCAGGUUCGUCAGCCCAUGAGACGCCUUCUCCAGAGCAGGACAGGCAGC
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Structure
        10         20         30        40        50          
UCGGCGGCUGCCCAAGC-   -|   AC    A  A   UCU         A  GUGAAAU 
                  GAG AGGC  CUCG GG CUG   AACCUGAGA UG       \
                  CUC UCCG  GAGU CC GAC   UUGGACUCU AC       G
CGACGGACAGGACGAGAC   U^   CA    A  C   UGC         A  UGGGAAU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsUGUG in loop
Tissue expression
-   +
Li Mi Ov Pe Te To
Mature sequence

Cli-Mir-1388_5p
mirBase accessionMIMAT0038674
Sequence 
0- AGGACUGUCUAACCUGAGAAUG -22
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Star sequence

Cli-Mir-1388_3p*
mirBase accessionMIMAT0038675
Sequence 
39- AUCUCAGGUUCGUCAGCCCAUG -61
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