MirGeneDB 2.1

MirGeneDB ID

Lch-Mir-1388

Family name MIR-1388 (all species)
Seed GGACUGU
Species Coelacanth (Latimeria chalumnae)
MiRBase ID
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(LatCha1_add)
JH129487.1: 80767-80826 [-] Ensembl
Precursor
(pre-Mir +30nt flank)
UGGCGGCUGAUAGAACUGAGUGGUGUUUGGAGGACUGUCUAACCUGAGAAUGGUGAACUCGAAGGUCAAUCUCAGGUUCGUCAGCCCAUAAAACGCUUCUUCCCAGGCAACCCAGCACGC
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Structure
        10          20        30        40        50         
UGGCGGCUGAUAGAACU--|  U       GGA  A   UCU         A  GUGAAC 
                   GAG GGUGUUU   GG CUG   AACCUGAGA UG      U
                   UUC UCGCAAA   CC GAC   UUGGACUCU AC      C
CGCACGACCCAACGGACCC^  U       AUA  C   UGC         A  UGGAAG 
.       110       100        90        80        70        60
Deep sequencing
3' NTU Unknown
MotifsUG at 5p(-14), CNNC at 3p(+17), UGUG in loop
Mature sequence

Lch-Mir-1388_5p (predicted)

mirBase accessionNone
Sequence
0- AGGACUGUCUAACCUGAGAAUG -22
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Star sequence

Lch-Mir-1388_3p* (predicted)

mirBase accessionNone
Sequence
38- AUCUCAGGUUCGUCAGCCCAUA -60
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