| MirGeneDB ID | Lch-Mir-1388 |
|---|---|
| Family name | MIR-1388 (all species) |
| Seed | GGACUGU |
| Species | Coelacanth (Latimeria chalumnae) |
| MiRBase ID | |
| Paralogues | |
| Orthologues | Aca-Mir-1388 Ami-Mir-1388 Bta-Mir-1388 Cfa-Mir-1388 Cli-Mir-1388 Cmi-Mir-1388 Cpi-Mir-1388 Cpo-Mir-1388 Dno-Mir-1388 Dre-Mir-1388 Eca-Mir-1388 Eca-Mir-1388-as Ete-Mir-1388 Gga-Mir-1388 Gja-Mir-1388 Gmo-Mir-1388 Laf-Mir-1388 Loc-Mir-1388 Mal-Mir-1388 Mdo-Mir-1388 Mmr-Mir-1388 Mun-Mir-1388 Oan-Mir-1388-v1 Oan-Mir-1388-v2 Pbv-Mir-1388 Sha-Mir-1388 Spt-Mir-1388 Sto-Mir-1388 Tgu-Mir-1388 Tni-Mir-1388 Xla-Mir-1388-P1 Xla-Mir-1388-P2 Xtr-Mir-1388 |
| Node of Origin (locus) | Gnathostomata |
| Node of Origin (family) | Gnathostomata |
| Genome context (LatCha1_add) |
JH129487.1: 80767-80826 [-] Ensembl |
| Precursor (pre-Mir +30nt flank) | UGGCGGCUGAUAGAACUGAGUGGUGUUUGGAGGACUGUCUAACCUGAGAAUGGUGAACUCGAAGGUCAAUCUCAGGUUCGUCAGCCCAUAAAACGCUUCUUCCCAGGCAACCCAGCACGCGet precursor sequence |
| Structure | 10 20 30 40 50 UGGCGGCUGAUAGAACU--| U GGA A UCU A GUGAAC GAG GGUGUUU GG CUG AACCUGAGA UG U UUC UCGCAAA CC GAC UUGGACUCU AC C CGCACGACCCAACGGACCC^ U AUA C UGC A UGGAAG . 110 100 90 80 70 60 |
| Deep sequencing | |
| 3' NTU | Unknown |
| Motifs | UG at 5p(-14), CNNC at 3p(+17), UGUG in loop |
| Mature sequence | Lch-Mir-1388_5p (predicted) |
| mirBase accession | None |
| Sequence |
0- AGGACUGUCUAACCUGAGAAUG -22
Get sequence
|
| Star sequence | Lch-Mir-1388_3p* (predicted) |
| mirBase accession | None |
| Sequence |
38- AUCUCAGGUUCGUCAGCCCAUA -60
Get sequence
|
