MirGeneDB 2.1
MirGeneDB ID

Tgu-Mir-1388

Family name MIR-1388 (all species)
Seed GGACUGU
Species Zebra finch (Taeniopygia guttata)
MiRBase ID tgu-mir-1388
Paralogues
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mun-Mir-1388  Oan-Mir-1388-v1  Oan-Mir-1388-v2  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tni-Mir-1388  Xla-Mir-1388-P1  Xla-Mir-1388-P2  Xtr-Mir-1388 
Node of Origin (locus) Gnathostomata
Node of Origin (family) Gnathostomata
Genome context
(TaeGut1_add)		 20: 8204279-8204340 [-] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
UUGGCAGCUGCCCCAGUGAGGGGCACCUCGAGGACUGUCUAACCUGAGAAUGGUGAAACAUCAAGGUCAAUCUCAGGUUCGUCAGCCCAUGAGAUGCCUUCUCCAGAGCGGGACGGGCAGCA
Get precursor sequence
Structure
        10          20         30        40        50          
UUGGCAGCUGCCCCAGU--   -|    C    A  A   UCU         A  GUGAAAC 
                   GAG GGGCA CUCG GG CUG   AACCUGAGA UG       \
                   CUC UCCGU GAGU CC GAC   UUGGACUCU AC       A
ACGACGGGCAGGGCGAGAC   U^    A    A  C   UGC         A  UGGAACU 
120       110       100        90        80        70
Deep sequencing
Go to detailed chart
3' NTU No
MotifsUG at 5p(-14), UGUG in loop
Tissue expression
-   +
Fe Fe Fe Fe Ma Ma Ma Ma
Mature sequence

Tgu-Mir-1388_5p
mirBase accessionMIMAT0027019
Sequence 
0- AGGACUGUCUAACCUGAGAAUG -22
Get sequence
Star sequence

Tgu-Mir-1388_3p*
mirBase accessionMIMAT0014594
Sequence 
39- AUCUCAGGUUCGUCAGCCCAUGA -62
Get sequence