MirGeneDB 3.0
MirGeneDB ID

Xla-Mir-1388-P1

Family name MIR-1388 (all species)
Seed GGACUGU
Species African clawed frog (Xenopus laevis)
MiRBase ID
Paralogues Xla-Mir-1388-P2 
Orthologues Aca-Mir-1388  Ami-Mir-1388  Bta-Mir-1388  Cfa-Mir-1388  Cli-Mir-1388  Cmi-Mir-1388  Cpi-Mir-1388  Cpo-Mir-1388  Dno-Mir-1388  Dre-Mir-1388  Eca-Mir-1388  Ete-Mir-1388  Gga-Mir-1388  Gja-Mir-1388  Gmo-Mir-1388  Laf-Mir-1388  Lch-Mir-1388  Loc-Mir-1388  Mal-Mir-1388  Mdo-Mir-1388  Mmr-Mir-1388  Mun-Mir-1388  Pbv-Mir-1388  Sha-Mir-1388  Spt-Mir-1388  Sto-Mir-1388  Tgu-Mir-1388  Tni-Mir-1388  Xtr-Mir-1388 
Node of Origin (locus) X. laevis
Node of Origin (family) Gnathostomata
Genome context
(GCF_001663975.1_XLA_v2)		 NC_030740.1: 18044448-18044508 [+] UCSC Ensembl
Precursor
(pre-Mir +30nt flank)
AGUGGCCAUGACAUGAGCACUUCUGCCCCAAGGACUGUCUGACCUGAGAAUGGGGAGAAAUGAACAUCAAUCUCAGGUUUGUCAGCCCAUGUGGCAGUGGUUGGCAGCAACAAUAAGAGGU
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Structure
        10          20        30        40        50          
AGUGGCCAUGACAUGAGC--|  U     C  A  A   UCU         A  GGGAGAA 
                    ACU CUGCC CA GG CUG   GACCUGAGA UG       \
                    UGG GACGG GU CC GAC   UUGGACUCU AC       A
UGGAGAAUAACAACGACGGU^  U     U  A  C   UGU         A  UACAAGU 
 .       110       100        90        80        70
Deep sequencing
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3' NTU No
MotifsCNNC at 3p(+17)
Tissue expression
-   +
Eg Em Em He Ki Re St St
Mature sequence

Xla-Mir-1388-P1_5p
mirBase accessionNone
Sequence 
0- AGGACUGUCUGACCUGAGAAUG -22
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Star sequence

Xla-Mir-1388-P1_3p*
mirBase accessionNone
Sequence 
39- AUCUCAGGUUUGUCAGCCCAUG -61
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