MirGeneDB 3.0
59 Patiria miniata microRNA genes
Sort by genome coordinates Motifs Tissue expression
-   +
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC Em To
Pmi-Let-7 pmi-let-7 LET-7 GAGGUAG MIMAT0032139 None JH773904.1 22588 22655 + Bilateria Bilateria Unknown 1
Pmi-Mir-1 pmi-mir-1 MIR-1 GGAAUGU None MIMAT0032140 JH783195.1 13179 13242 + Bilateria Bilateria No 1
Pmi-Mir-7 pmi-mir-7 MIR-7 GGAAGAC MIMAT0032141 None JH771671.1 22563 22624 + Bilateria Bilateria No 1 1 1
Pmi-Mir-8 pmi-mir-200 MIR-8 AUCAUAC MIMAT0032165 MIMAT0032166 JH772963.1 6253 6316 + Nephrozoa Nephrozoa No 1
Pmi-Mir-9 pmi-mir-9 MIR-9 CUUUGGU MIMAT0032142 None JH769648.1 36031 36093 + Bilateria Bilateria No 1
Pmi-Mir-10-P1 pmi-mir-10 MIR-10 ACCCUGU MIMAT0032143 None JH769195.1 55596 55659 - Bilateria Eumetazoa No 1 1
Pmi-Mir-10-P2 pmi-mir-100 MIR-10 ACCCGUA MIMAT0032156 None JH789580.1 61 120 + Bilateria Eumetazoa No 1
Pmi-Mir-10-P3 pmi-mir-125 MIR-10 CCCUGAG MIMAT0032158 None JH773904.1 23065 23124 + Bilateria Eumetazoa No 1 1
Pmi-Mir-22-P2 pmi-mir-22 MIR-22 CAGCUGC None MIMAT0032144 JH783623.1 312 377 + Bilateria Bilateria No 1
Pmi-Mir-29-P1 pmi-mir-29a MIR-29 AGCACCA None MIMAT0032145 JH769952.1 66752 66814 - Bilateria Bilateria No 1
Pmi-Mir-29-P2 pmi-mir-29b MIR-29 AGCACCA None MIMAT0032146 JH769952.1 63311 63374 - Bilateria Bilateria No 1
Pmi-Mir-31-P3 pmi-mir-31-2 MIR-31 GGCAAGA MIMAT0032147 None JH770732.1 21164 21227 + P. miniata Bilateria No 1 1
Pmi-Mir-31-P4 pmi-mir-31-1 MIR-31 GGCAAGA MIMAT0032147 None JH770732.1 21556 21616 + P. miniata Bilateria No
Pmi-Mir-31-P5a pmi-mir-31-3 MIR-31 GGCAAGA MIMAT0032147 None JH770732.1 22547 22607 + P. miniata Bilateria No 1
Pmi-Mir-31-P5b pmi-mir-31-3 MIR-31 GGCAAGA MIMAT0032147 None JH770732.1 22547 22607 + P. miniata Bilateria No 1
Pmi-Mir-33 pmi-mir-33 MIR-33 UGCAUUG MIMAT0032148 None JH781496.1 16214 16270 + Bilateria Bilateria No 1
Pmi-Mir-34 pmi-mir-34 MIR-34 GGCAGUG MIMAT0032149 None JH774080.1 25823 25887 + Bilateria Bilateria No 1 1
Pmi-Mir-71 pmi-mir-71 MIR-71 GAAAGAC MIMAT0032150 None JH784216.1 18589 18651 + Nephrozoa Nephrozoa No 1 1 1
Pmi-Mir-76 pmi-mir-981 MIR-76 UCGUUGU None MIMAT0032174 JH772918.1 53620 53684 + Nephrozoa Nephrozoa Unknown 1
Pmi-Mir-92-o21 None MIR-92 AUUGCAC None None JH772232.1 21466 21523 - P. miniata Bilateria No 1
Pmi-Mir-92-o22 pmi-mir-92b MIR-92 AUUGCAC None MIMAT0032152 JH772232.1 12795 12854 - P. miniata Bilateria No
Pmi-Mir-92-o23 pmi-mir-92a MIR-92 AUUGCAC None MIMAT0032151 JH772232.1 11838 11900 - P. miniata Bilateria No
Pmi-Mir-92-o24 pmi-mir-92d MIR-92 AUUGCAC None MIMAT0032154 JH772232.1 11031 11096 - P. miniata Bilateria No 1 1
Pmi-Mir-92-o25 pmi-mir-92c MIR-92 AUUGCAC None MIMAT0032153 JH772232.1 9421 9483 - P. miniata Bilateria No 1
Pmi-Mir-92-o26 None MIR-92 AUUGCAC None None JH769491.1 32701 32762 + P. miniata Bilateria No 1 1 1
Pmi-Mir-92-o27 None MIR-92 AUUGCAC None None JH769491.1 33956 34019 + P. miniata Bilateria No 1 1
Pmi-Mir-96-P1 pmi-mir-96 MIR-96 UUGGCAC MIMAT0032155 None JH769268.1 99565 99625 + Bilateria Bilateria No 1
Pmi-Mir-96-P2 None MIR-96 UUGGCAA None None JH769268.1 102083 102145 + Bilateria Bilateria No 1
Pmi-Mir-96-P3 None MIR-96 AUGGCAC None None JH769268.1 98683 98749 + Bilateria Bilateria No 1 1
Pmi-Mir-103 pmi-mir-2013 MIR-103 GCAGCAU None MIMAT0032188 JH783623.1 1378 1440 + Bilateria Bilateria No 1
Pmi-Mir-124 pmi-mir-124 MIR-124 AAGGCAC None MIMAT0032157 JH770184.1 38727 38790 + Bilateria Bilateria Unknown 1
Pmi-Mir-133-P9a pmi-mir-133 MIR-133 UUGGUCC None MIMAT0032159 JH774055.1 26185 26245 + P. miniata Bilateria Unknown 1 1
Pmi-Mir-133-P9b pmi-mir-133 MIR-133 UUGGUCC None MIMAT0032159 JH774055.1 26185 26245 + P. miniata Bilateria Unknown 1 1
Pmi-Mir-137-v1 pmi-mir-137 MIR-137 AUUGCUU None MIMAT0032160 JH769235.1 38217 38276 + Bilateria Bilateria No 1
Pmi-Mir-137-v2 pmi-mir-137 MIR-137 UAUUGCU None MIMAT0032160 JH769235.1 38217 38276 + Bilateria Bilateria No 1
Pmi-Mir-153 pmi-mir-153 MIR-153 CAUUUUU None MIMAT0032161 JH771263.1 2081 2139 - Bilateria Bilateria No
Pmi-Mir-184 pmi-mir-184 MIR-184 GGACGGA None MIMAT0032163 JH772382.1 890 952 - Nephrozoa Nephrozoa No
Pmi-Mir-190 None MIR-190 GAUAUGU None None JH773477.1 52114 52179 - Bilateria Bilateria No 1
Pmi-Mir-193-P1 pmi-mir-193 MIR-193 GAGGUUG None MIMAT0032164 JH779788.1 5900 5962 - Bilateria Bilateria No 1
Pmi-Mir-193-P2 None MIR-193 AAUGCCC None None JH779788.1 4968 5032 - Bilateria Bilateria No 1
Pmi-Mir-210-v1 pmi-mir-210 MIR-210 UGUGCGU None MIMAT0032167 JH770142.1 76062 76127 + Bilateria Bilateria No 1 1
Pmi-Mir-210-v2 pmi-mir-210 MIR-210 UUGUGCG None MIMAT0032167 JH770142.1 76062 76127 + Bilateria Bilateria No 1
Pmi-Mir-219 pmi-mir-219 MIR-219 GAUUGUC MIMAT0032168 None JH776188.1 5024 5085 + Bilateria Bilateria No 1
Pmi-Mir-242 pmi-mir-242 MIR-242 UGCGUAG MIMAT0032169 None JH788435.1 1558 1620 + Nephrozoa Nephrozoa No 1
Pmi-Mir-252-P1 pmi-mir-252b MIR-252 UAAGUAG MIMAT0032171 None JH773771.1 6932 6991 + Bilateria Bilateria No 1 1
Pmi-Mir-252-P2 pmi-mir-252a MIR-252 UAAGUAC MIMAT0032170 None JH773771.1 7688 7753 + Bilateria Bilateria No
Pmi-Mir-278 pmi-mir-278 MIR-278 CGGUGGG None MIMAT0032172 JH783889.1 1199 1259 + Bilateria Bilateria No 1
Pmi-Mir-375 pmi-mir-375 MIR-375 UUGUUCG None MIMAT0032173 JH780513.1 4813 4877 + Nephrozoa Nephrozoa No 1
Pmi-Mir-2001 pmi-mir-2001 MIR-2001 UGUGACC MIMAT0032175 None JH782853.1 10000 10059 - Bilateria Bilateria No 1 1
Pmi-Mir-2002 pmi-mir-2002 MIR-2002 GAAUACA None MIMAT0032176 JH774080.1 19493 19552 + Eleutherozoa Eleutherozoa No 1 1 1
Pmi-Mir-2004 pmi-mir-2004 MIR-2004 CACACAC None MIMAT0032177 JH775453.1 21223 21282 + Eleutherozoa Eleutherozoa No
Pmi-Mir-2005 pmi-mir-2005 MIR-2005 GUCCAAU MIMAT0032178 None JH777837.1 23108 23169 + Eleutherozoa Eleutherozoa Unknown 1 1
Pmi-Mir-2006 pmi-mir-2006 MIR-2006 AGCACAC MIMAT0032179 MIMAT0032180 JH777652.1 43603 43663 + Ambulacraria Ambulacraria No 1
Pmi-Mir-2007 pmi-mir-2007 MIR-2007 AUUUCAG MIMAT0032181 None JH771167.1 3247 3310 - Ambulacraria Ambulacraria No 1
Pmi-Mir-2008 pmi-mir-2008 MIR-2008 GUAUUAA None MIMAT0032182 JH769329.1 20489 20551 + Ambulacraria Ambulacraria No 1
Pmi-Mir-2009 pmi-mir-2009 MIR-2009 GAGUUGU None MIMAT0032183 JH768722.1 167543 167600 + Ambulacraria Ambulacraria No 1
Pmi-Mir-2010 pmi-mir-2010 MIR-2010 UACUGUU None MIMAT0032184 JH771100.1 27470 27530 + Eleutherozoa Eleutherozoa No 1 1
Pmi-Mir-2011 pmi-mir-2011 MIR-2011 CAAGGUG MIMAT0032185 MIMAT0032186 JH780600.1 59500 59563 + Ambulacraria Ambulacraria No 1 1
Pmi-Mir-2012 pmi-mir-2012 MIR-2012 AGUACUG MIMAT0032187 None JH772886.1 37288 37347 + Ambulacraria Ambulacraria No 1

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all

Download genome coordinates (GFF format)

Download count matrix