Mir
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DB
2.1
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58 microRNA genes with seed CCAGCAU
Sort by genome coordinates
Motifs
MirGeneDB ID
MiRBase ID
Family
Seed
5p accession
3p accession
Chromosome
Start
End
Strand
Node of origin (locus)
Node of origin (family)
3' NTU
UG
▼
UGUG
CNNC
Ebu-Mir-338-o1
None
MIR-338
CCAGCAU
None
None
FYBX02010512.1
3093234
3093293
+
E. burgeri
Vertebrata
No
1
1
Tgu-Mir-338-P1
tgu-mir-338
MIR-338
CCAGCAU
MIMAT0017389
MIMAT0014542
14
1435957
1436016
+
Vertebrata
Vertebrata
No
1
1
Sto-Mir-338-P1
None
MIR-338
CCAGCAU
None
None
BFAA01002757.1
145388
145447
-
Vertebrata
Vertebrata
No
1
1
Ami-Mir-338-P1
ami-mir-338-2
MIR-338
CCAGCAU
MIMAT0038270
MIMAT0038269
NW_017711568.1
12303543
12303602
+
Vertebrata
Vertebrata
No
1
1
Cmi-Mir-338-P1
None
MIR-338
CCAGCAU
None
None
KI635884.1
1248653
1248712
-
Vertebrata
Vertebrata
No
1
1
Cpi-Mir-338-P1
cpi-mir-338b
MIR-338
CCAGCAU
MIMAT0037866
MIMAT0037867
JH584772
1374338
1374397
-
Vertebrata
Vertebrata
No
1
1
Xtr-Mir-338-P1
xtr-mir-338-2
MIR-338
CCAGCAU
None
MIMAT0003665
chr9
20077940
20077999
+
Vertebrata
Vertebrata
No
1
1
1
Mun-Mir-338-P1
None
MIR-338
CCAGCAU
None
None
338-P1_LR594639.1:26234570-26234711
42
101
-
Vertebrata
Vertebrata
No
1
1
Lch-Mir-338-P1
None
MIR-338
CCAGCAU
None
None
JH127205.1
990819
990878
-
Vertebrata
Vertebrata
Unknown
1
1
Gmo-Mir-338-P1
gmo-mir-338-2
MIR-338
CCAGCAU
MIMAT0044152
MIMAT0044153
GeneScaffold_1790
294559
294620
-
Vertebrata
Vertebrata
No
1
1
1
Mal-Mir-338-P1
None
MIR-338
CCAGCAU
None
None
KV884859.1
383307
383368
+
Vertebrata
Vertebrata
No
1
1
1
Dre-Mir-338-P1
dre-mir-338-2
MIR-338
CCAGCAU
None
MIMAT0001873
chr12
17727559
17727620
+
Vertebrata
Vertebrata
No
1
1
1
Cli-Mir-338-P1
cli-mir-338a
MIR-338
CCAGCAU
MIMAT0038618
MIMAT0038619
scaffold1084
334966
335025
+
Vertebrata
Vertebrata
No
1
1
Tgu-Mir-338-P2
None
MIR-338
ACAAUAU
None
None
18
1498115
1498175
+
Vertebrata
Vertebrata
No
1
1
Sto-Mir-338-P2
None
MIR-338
CCAGCAU
None
None
BFAA01011895.1
45596
45655
+
Vertebrata
Vertebrata
No
1
1
Cmi-Mir-338-P2
None
MIR-338
CCAGCAU
None
None
KI635864.1
8237603
8237662
-
Vertebrata
Vertebrata
No
1
1
Aca-Mir-338-P2
aca-mir-338
MIR-338
CCAGCAU
MIMAT0021937
MIMAT0021938
2
99499976
99500036
+
Vertebrata
Vertebrata
No
1
1
Pbv-Mir-338-P2
pbv-mir-338
MIR-338
CCAGCAU
MIMAT0039041
MIMAT0039042
KE952972.1
1131002
1131062
+
Vertebrata
Vertebrata
No
1
1
Gja-Mir-338-P2
None
MIR-338
CCAGCAU
None
None
NW_015160208.1
1494395
1494455
+
Vertebrata
Vertebrata
No
1
1
Spt-Mir-338-P2
None
MIR-338
CCAGCAU
None
None
QEPC01011341.1
17583536
17583596
-
Vertebrata
Vertebrata
Unknown
1
1
Lch-Mir-338-P2
None
MIR-338
CCAGCAU
None
None
JH126581.1
1083401
1083462
+
Vertebrata
Vertebrata
Unknown
1
1
Sha-Mir-338-P2
sha-mir-338
MIR-338
CCAGCAU
None
MIMAT0022818
GL856847.1
53467
53527
+
Vertebrata
Vertebrata
No
1
1
Mdo-Mir-338-P2
mdo-mir-338
MIR-338
CCAGCAU
None
MIMAT0004136
2
233883752
233883812
+
Vertebrata
Vertebrata
No
1
1
Gga-Mir-338-P2
gga-mir-338
MIR-338
CCAGCAU
MIMAT0037551
MIMAT0037552
18
9290670
9290730
+
Vertebrata
Vertebrata
No
1
1
Cli-Mir-338-P2
cli-mir-338b
MIR-338
CCAGCAU
MIMAT0038620
MIMAT0038621
scaffold331
82791
82851
+
Vertebrata
Vertebrata
No
1
1
Loc-Mir-338-P2
None
MIR-338
CCAGCAU
None
None
LG10
37463978
37464038
-
Vertebrata
Vertebrata
No
1
1
Xla-Mir-338-P1a
None
MIR-338
CCAGCAU
None
None
NC_030740.1
99893009
99893068
-
X. laevis
Vertebrata
No
1
1
1
Tni-Mir-338-P2a
tni-mir-338
MIR-338
CCAGCAU
None
MIMAT0003008
3
10941080
10941140
+
Clupeocephala
Vertebrata
No
1
Gmo-Mir-338-P2a
gmo-mir-338-1
MIR-338
CCAGCAU
MIMAT0044177
MIMAT0044153
GeneScaffold_2140
179542
179603
-
Clupeocephala
Vertebrata
No
1
1
Mal-Mir-338-P2a
None
MIR-338
CCAGCAU
None
None
KV885038.1
28318
28378
+
Clupeocephala
Vertebrata
No
1
Dre-Mir-338-P2a
dre-mir-338-3
MIR-338
CCAGCAU
MIMAT0048672
MIMAT0048673
chr3
51907489
51907549
-
Clupeocephala
Vertebrata
No
1
Mun-Mir-338-P2e
None
MIR-338
CCAGCAU
None
None
338-P2c_LR594637.1:340963719-340963979
101
161
+
M. unicolor
Vertebrata
No
1
1
Xla-Mir-338-P1b
xla-mir-338
MIR-338
CCAGCAU
MIMAT0046578
MIMAT0046579
NC_030741.1
89723910
89723969
-
X. laevis
Vertebrata
No
1
1
1
Tni-Mir-338-P2b
None
MIR-338
CCAGCAU
None
None
2
2385304
2385364
+
Clupeocephala
Vertebrata
No
1
1
Gmo-Mir-338-P2b
gmo-mir-338-3
MIR-338
CCAGCAU
MIMAT0044309
MIMAT0044153
GeneScaffold_640
8792
8852
-
Clupeocephala
Vertebrata
No
1
1
Mun-Mir-338-P2f
None
MIR-338
CCAGCAU
None
None
338-P2d_LR594637.1:341054640-341054900
101
161
+
M. unicolor
Vertebrata
No
1
1
Tni-Mir-338-P1
None
MIR-338
CCAGCAU
None
None
2
6249043
6249104
-
Vertebrata
Vertebrata
No
1
Loc-Mir-338-P1
None
MIR-338
CCAGCAU
None
None
LG13
15505409
15505470
+
Vertebrata
Vertebrata
No
1
1
Ebu-Mir-338-o2
None
MIR-338
CCAGCAU
None
None
FYBX02009662.1
114366
114431
+
E. burgeri
Vertebrata
No
1
1
Hsa-Mir-338-P2
hsa-mir-338
MIR-338
CCAGCAU
MIMAT0004701
MIMAT0000763
chr17
81125886
81125944
-
Vertebrata
Vertebrata
No
1
Ami-Mir-338-P2
ami-mir-338-1
MIR-338
CCAGCAU
MIMAT0038268
MIMAT0038269
NW_017708635.1
14518
14578
-
Vertebrata
Vertebrata
No
1
Mml-Mir-338-P2
mml-mir-338
MIR-338
CCAGCAU
MIMAT0006277
MIMAT0006278
chr16
74986914
74986972
-
Vertebrata
Vertebrata
No
1
Cpi-Mir-338-P2
cpi-mir-338a
MIR-338
ACAAUAU
MIMAT0037864
MIMAT0037865
JH584464
13339455
13339515
+
Vertebrata
Vertebrata
No
1
Mmu-Mir-338-P2
mmu-mir-338
MIR-338
CCAGCAU
MIMAT0004647
MIMAT0000582
chr11
120014780
120014837
-
Vertebrata
Vertebrata
No
1
Rno-Mir-338-P2
rno-mir-338
MIR-338
CCAGCAU
MIMAT0004646
MIMAT0000581
chr10
109195254
109195311
-
Vertebrata
Vertebrata
No
1
Cpo-Mir-338-P2
cpo-mir-338
MIR-338
CCAGCAU
MIMAT0047174
MIMAT0047175
scaffold_76
5706537
5706595
-
Vertebrata
Vertebrata
No
1
Ocu-Mir-338-P2
None
MIR-338
CCAGCAU
None
None
Ocu-Mir-338-P1_pre_CM023790.1:63182364-63182505
42
101
-
Vertebrata
Vertebrata
No
1
Cfa-Mir-338-P2
cfa-mir-338
MIR-338
CCAGCAU
None
MIMAT0006739
chr9
918652
918710
+
Vertebrata
Vertebrata
No
1
Bta-Mir-338-P2
bta-mir-338
MIR-338
CCAGCAU
None
MIMAT0009292
NC_037346.1
51569635
51569693
+
Vertebrata
Vertebrata
No
1
Xtr-Mir-338-P2
xtr-mir-338-1
MIR-338
CCAGCAU
None
MIMAT0003665
chr10
18675794
18675854
+
Vertebrata
Vertebrata
No
1
Dno-Mir-338-P2
dno-mir-338
MIR-338
CCAGCAU
MIMAT0047819
MIMAT0047820
JH565942
225934
225994
+
Vertebrata
Vertebrata
No
1
1
Ete-Mir-338-P2
None
MIR-338
CCAGCAU
None
None
manual_Ete-Mir-338-P1
34
91
+
Vertebrata
Vertebrata
No
1
Oan-Mir-338-P2
None
MIR-338
CCAGCAU
None
None
NW_021638079.1
3139464
3139523
-
Vertebrata
Vertebrata
No
1
Xla-Mir-338-P2d
None
MIR-338
ACAAUAU
None
None
NC_030741.1
22008109
22008169
-
X. laevis
Vertebrata
No
1
Pma-Mir-338-o3
None
MIR-338
CCAGCAU
None
None
NC_046071.1
19738758
19738816
+
P. marinus
Vertebrata
No
1
Mal-Mir-338-P2b
None
MIR-338
CCAGCAU
None
None
KV884755.1
1797539
1797599
+
Clupeocephala
Vertebrata
No
1
Dre-Mir-338-P2b
dre-mir-338-1
MIR-338
CCAGCAU
None
MIMAT0001873
chr12
35710532
35710592
-
Clupeocephala
Vertebrata
No
1
Xla-Mir-338-P2c
None
MIR-338
ACAAUAU
None
None
NC_030740.1
22348510
22348570
+
X. laevis
Vertebrata
No
1
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