MirGeneDB 3.0
67 microRNA genes with seed CACAGCC
Sort by genome coordinates Motifs
MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC
Cte-Mir-2-o13 cte-mir-2b MIR-2 CACAGCC None MIMAT0009504 CAPTEscaffold_933 10046 10112 + C. teleta Protostomia No 1 1
Pdu-Mir-2-o25-v2 None MIR-2 CACAGCC None None JAPTHN010000003.1 67086277 67086337 + P. dumerilii Protostomia No 1
Dgr-Mir-2-o36 None MIR-2 CACAGCC None None CAJFCJ010000007.1 2552877 2552934 + D. gyrociliatus Protostomia Unknown 1 1
Snu-Mir-2-o40-v2 None MIR-2 CACAGCC None None CM049316.1 13593314 13593376 + S. nudus Protostomia No 1
Snu-Mir-2-o42-v2 None MIR-2 CACAGCC None None CM049316.1 13594489 13594550 + S. nudus Protostomia No 1 1
Npo-Mir-2-o45 None MIR-2 CACAGCC None None JACATO010000013.1 409573 409634 + Cephalopoda Protostomia Unknown 1 1
Esc-Mir-2-o45-v1 None MIR-2 CACAGCC None None None None None None Cephalopoda Protostomia No
Obi-Mir-2-o45-v1 None MIR-2 CACAGCC None None KQ419829 51363 51423 - Cephalopoda Protostomia No 1
Ovu-Mir-2-o45-v1 None MIR-2 CACAGCC None None RXHP01057295.1 23280 23340 - Cephalopoda Protostomia No 1
Obi-Mir-2-o46-v1 None MIR-2 CACAGCC None None KQ419829 51011 51070 - Octopus Protostomia No 1
Ovu-Mir-2-o46-v1 None MIR-2 CACAGCC None None RXHP01057295.1 22936 22995 - Octopus Protostomia No 1
Npo-Mir-2-o47 None MIR-2 CACAGCC None None JACATO010000013.1 409822 409878 + Cephalopoda Protostomia Unknown 1
Esc-Mir-2-o48-v1 None MIR-2 CACAGCC None None None None None None Cephalopoda Protostomia No
Obi-Mir-2-o48-v1 None MIR-2 CACAGCC None None KQ419829 49651 49710 - Cephalopoda Protostomia No 1 1
Ovu-Mir-2-o48-v1 None MIR-2 CACAGCC None None RXHP01057295.1 21561 21620 - Cephalopoda Protostomia No 1 1
Hru-Mir-2-o55 None MIR-2 CACAGCC None None JALGQA010000019.1 17033087 17033148 + H. rufescens Protostomia No
Mgi-Mir-2-o56 None MIR-2 GGUCAAU None None scaffold602 445001 445057 + C. gigas Protostomia No 1
Dmo-Mir-2-P1 dmo-mir-2c MIR-2 CACAGCC None MIMAT0008652 scaffold_6540 10568108 10568173 + Arthropoda Protostomia No
Dan-Mir-2-P1-v1 dan-mir-2c MIR-2 CACAGCC None MIMAT0008442 scaffold_13340 12827849 12827913 - Arthropoda Protostomia No
Dme-Mir-2-P1-v1 dme-mir-2c MIR-2 CACAGCC MIMAT0020845 MIMAT0000411 3R 15417760 15417826 - Arthropoda Protostomia No
Dsi-Mir-2-P1-v1 dsi-mir-2c MIR-2 CACAGCC None MIMAT0008854 3R 9985314 9985380 + Arthropoda Protostomia No
Dya-Mir-2-P1-v1 dya-mir-2c MIR-2 CACAGCC None MIMAT0009097 3R 15188380 15188446 + Arthropoda Protostomia No
Gpa-Mir-2-P1-v1 None MIR-2 CACAGCC None None Scaffold379 74466 74531 - Arthropoda Protostomia No
Tca-Mir-2-P1-v1 tca-mir-2-3 MIR-2 CACAGCC MIMAT0019093 MIMAT0008353 LG3 560832 560890 + Arthropoda Protostomia No 1
Aae-Mir-2-P1-v2 aae-mir-2c MIR-2 CACAGCC None MIMAT0014308 supercont1.268 889091 889155 - Arthropoda Protostomia No
Aga-Mir-2-P1-v2 aga-mir-2-2 MIR-2 CACAGCC None MIMAT0009202 NC_064601.1 106557875 106557936 - Arthropoda Protostomia No
Bge-Mir-2-P1-v2 None MIR-2 CACAGCC None None KZ615136.1 496135 496196 + Arthropoda Protostomia No 1
Dlo-Mir-2-P1-v2 None MIR-2 CACAGCC None None NC_087235.1 3199844 3199898 + Arthropoda Protostomia No 1
Hme-Mir-2-P1-v2 hme-mir-2a MIR-2 CACAGCC None MIMAT0024971 HE671256 344481 344540 + Arthropoda Protostomia No 1 1
Bge-Mir-2-P3-v2 None MIR-2 CACAGCC None None KZ615436.1 353745 353804 - Arthropoda Protostomia No 1 1 1
Dlo-Mir-2-P3-v2 None MIR-2 CACAGCC None None NC_087235.1 3200363 3200424 + Arthropoda Protostomia No 1
Hme-Mir-2-P3-v2 hme-mir-2b MIR-2 CACAGCC None MIMAT0024972 HE671256 344897 344955 + Arthropoda Protostomia No 1 1
Tca-Mir-2-P3-v2 tca-mir-2-1 MIR-2 CACAGCC MIMAT0019094 MIMAT0008353 LG3 561198 561260 + Arthropoda Protostomia No 1
Aae-Mir-2-P4-v2 aae-mir-2b MIR-2 CACAGCC None MIMAT0014306 supercont1.268 887257 887317 - Arthropoda Protostomia No
Aga-Mir-2-P4-v2 aga-mir-2-1 MIR-2 CACAGCC None MIMAT0009202 NC_064601.1 106556284 106556349 - Arthropoda Protostomia No 1
Bge-Mir-2-P4-v2 None MIR-2 CACAGCC None None KZ615436.1 350982 351043 - Arthropoda Protostomia No 1 1
Tca-Mir-2-P4-v2 tca-mir-2-2 MIR-2 CACAGCC MIMAT0019096 MIMAT0008353 LG3 561348 561412 + Arthropoda Protostomia No 1
Dan-Mir-2-P4a-v2 dan-mir-2a-1 MIR-2 CACAGCC None MIMAT0008414 scaffold_12916 12013671 12013735 + Glossinidae + Drosophilidae Protostomia No 1
Dme-Mir-2-P4a-v2 dme-mir-2a-1 MIR-2 CACAGCC MIMAT0020780 MIMAT0000106 2L 19569901 19569966 - Glossinidae + Drosophilidae Protostomia No 1
Dmo-Mir-2-P4a-v2 dmo-mir-2a-1 MIR-2 CACAGCC None MIMAT0008672 scaffold_6500 6908329 6908396 + Glossinidae + Drosophilidae Protostomia No 1
Dsi-Mir-2-P4a-v2 dsi-mir-2a-1 MIR-2 CACAGCC None MIMAT0008853 2L 19065589 19065654 - Glossinidae + Drosophilidae Protostomia No 1
Dya-Mir-2-P4a-v2 dya-mir-2a-1 MIR-2 CACAGCC None MIMAT0009106 2R 6066959 6067024 - Glossinidae + Drosophilidae Protostomia No 1
Gpa-Mir-2-P4a-v2 None MIR-2 CACAGCC None None Scaffold18 2343517 2343607 - Glossinidae + Drosophilidae Protostomia No 1
Dan-Mir-2-P4b-v2 dan-mir-2a-2 MIR-2 CACAGCC None MIMAT0008414 scaffold_12916 12013993 12014052 + Glossinidae + Drosophilidae Protostomia No
Dme-Mir-2-P4b-v2 dme-mir-2a-2 MIR-2 CACAGCC MIMAT0020781 MIMAT0000106 2L 19569495 19569554 - Glossinidae + Drosophilidae Protostomia No
Dmo-Mir-2-P4b-v2 dmo-mir-2a-2 MIR-2 CACAGCC None MIMAT0008672 scaffold_6500 6908917 6908978 + Glossinidae + Drosophilidae Protostomia No 1 1
Dsi-Mir-2-P4b-v2 dsi-mir-2a-2 MIR-2 CACAGCC None MIMAT0008853 2L 19065170 19065229 - Glossinidae + Drosophilidae Protostomia No
Dya-Mir-2-P4b-v2 dya-mir-2a-2 MIR-2 CACAGCC None MIMAT0009106 2R 6066569 6066628 - Glossinidae + Drosophilidae Protostomia No
Gpa-Mir-2-P4b-v2 None MIR-2 CACAGCC None None Scaffold18 2343308 2343367 - Glossinidae + Drosophilidae Protostomia No
Pve-Mir-2-o74-v2 None MIR-2 CACAGCC None None CM062295.1:484570088-484570348 101 161 - Dentaliidae Protostomia No 1 1
Pve-Mir-2-o75-v2 None MIR-2 CACAGCC None None CM062295.1:484566263-484566525 101 163 - Dentaliidae Protostomia No 1
Pve-Mir-2-o76-v2 None MIR-2 CACAGCC None None CM062295.1:484550445-484550703 101 159 - Dentaliidae Protostomia No 1 1
Pve-Mir-2-o78-v2 None MIR-2 CACAGCC None None CM062295.1:484544506-484544763 101 158 - Dentaliidae Protostomia No 1
Lhy-Mir-2-o80 None MIR-2 CACAGCC None None scaffold155753_41.9 2057 2118 - L. hyalina Protostomia No 1
Mom-Mir-2-o85-v1 None MIR-2 CACAGCC None None JARFOD010000037.1 49292 49353 + Polyplacophora Protostomia No 1 1
Agr-Mir-2-o86a-v1 None MIR-2 CACAGCC None None JABBOT010000080.1 1400008 1400066 + A. granulata Protostomia No 1 1
Agr-Mir-2-o87-v1 None MIR-2 CACAGCC None None JABBOT010000080.1 1400233 1400291 + A. granulata Protostomia No 1
War-Mir-2-o93 None MIR-2 CACAGCC None None WNLI01003363.1 15447 15507 + W. argentea Protostomia No 1
Pau-Mir-2-o109 None MIR-2 CACAGCC None None NMRA01000510.1 285572 285637 + P. australis Protostomia No
Llo-Mir-2-o114-v1 None MIR-2 CACAGCC None None OU343002.1 11598646 11598704 - Lineidae Protostomia No
Sme-Mir-2-o129 sme-mir-2b MIR-2 CACAGCC MIMAT0003965 MIMAT0003966 NNSW01000014_dd_Smes_g4_14 3096425 3096480 + S. mediterranea Protostomia Yes 1
Sma-Mir-2-o130 sma-mir-2a MIR-2 CACAGCC MIMAT0025029 MIMAT0025030 OU426849.1 4544063 4544117 + S. mansoni Protostomia No 1
Egr-Mir-2-o136 egr-mir-2c MIR-2 CACAGCC MIMAT0020231 MIMAT0020232 APAU02000027.1 925661 925716 + E. granulosus Protostomia No 1
Ofu-Mir-2-o153 None MIR-2 CACAGCC None None CAIIXF020000003.1 15958470 15958526 + O. fusiformis Protostomia No 1 1
Pcr-Mir-2-o159 None MIR-2 CACAGCC None None CAJQUW010002633.1 636086 636150 + P. crozeri Protostomia No 1 1
Dlo-Mir-67-P15-v2 None MIR-67 CACAGCC None None NC_087235.1 3201488 3201549 + D. longicaudata Protostomia No
Mml-Novel-1 None MML-NOVEL-1 CACAGCC None None CM014350.1 108279013 108279073 - M. mulatta M. mulatta No 1

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