MirGeneDB 3.0
106 Glossina pallidipes microRNA genes
Sort by genome coordinates Motifs Tissue expression
-   +
MirGeneDB ID ▼ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC To To To To To To To To To To To To To To To To To To To To To
Gpa-Bantam None BANTAM GAGAUCA None None Scaffold4 3165913 3165971 - Protostomia Protostomia No
Gpa-Iab-4 None IAB-4 CGUAUAC None None Scaffold177 289202 289258 - Arthropoda Arthropoda No 1 1
Gpa-Let-7 None LET-7 GAGGUAG None None Scaffold60 1061874 1061941 + Bilateria Bilateria No 1
Gpa-Mir-1 None MIR-1 GGAAUGU None None Scaffold39 433990 434050 + Bilateria Bilateria No 1
Gpa-Mir-2-P1-v1 None MIR-2 CACAGCC None None Scaffold379 74466 74531 - Arthropoda Protostomia No
Gpa-Mir-2-P1-v2 None MIR-2 AUCACAG None None Scaffold379 74466 74531 - Arthropoda Protostomia No
Gpa-Mir-2-P2a None MIR-2 AUCACAG None None Scaffold379 73449 73516 - Neoptera Protostomia No
Gpa-Mir-2-P2b None MIR-2 AUCACAG None None Scaffold6 536660 536722 + Neoptera Protostomia No 1 1
Gpa-Mir-2-P3a None MIR-2 AUCACAG None None Scaffold73 688954 689018 - Glossinidae + Drosophilidae Protostomia No
Gpa-Mir-2-P3b None MIR-2 AUCACAG None None Scaffold18 2343730 2343802 - Glossinidae + Drosophilidae Protostomia Yes
Gpa-Mir-2-P4a-v1 None MIR-2 AUCACAG None None Scaffold18 2343517 2343607 - Glossinidae + Drosophilidae Protostomia No
Gpa-Mir-2-P4a-v2 None MIR-2 CACAGCC None None Scaffold18 2343517 2343607 - Glossinidae + Drosophilidae Protostomia No 1
Gpa-Mir-2-P4b-v1 None MIR-2 AUCACAG None None Scaffold18 2343308 2343367 - Glossinidae + Drosophilidae Protostomia No
Gpa-Mir-2-P4b-v2 None MIR-2 CACAGCC None None Scaffold18 2343308 2343367 - Glossinidae + Drosophilidae Protostomia No
Gpa-Mir-2-P5-v1 None MIR-2 AAGGAAC None None Scaffold26 90896 90954 + Pancrustacea Protostomia No 1
Gpa-Mir-2-P5-v2 None MIR-2 AAAAGGA None None Scaffold26 90894 90956 + Pancrustacea Protostomia No 1 1
Gpa-Mir-2-P6 None MIR-2 AUCACAG None None Scaffold26 93729 93811 + Glossinidae + Drosophilidae Protostomia No 1
Gpa-Mir-2-P7 None MIR-2 AUCACAG None None Scaffold391 37678 37806 - Neoptera Protostomia No 1
Gpa-Mir-2-P8 None MIR-2 ACAGUAU None None Scaffold249 70399 70463 - Aparaglossata Protostomia Unknown 1 1
Gpa-Mir-2-P9 None MIR-2 UAAGGAA None None Scaffold132 422743 422809 + Glossinidae + Drosophilidae Protostomia No
Gpa-Mir-3 None MIR-3 CACUGGA None None Scaffold26 89648 89709 + Pancrustacea Pancrustacea No 1
Gpa-Mir-7 None MIR-7 GGAAGAC None None Scaffold88 1014372 1014433 - Bilateria Bilateria No 1
Gpa-Mir-8 None MIR-8 AAUACUG None None Scaffold240 175492 175555 + Nephrozoa Nephrozoa No 1
Gpa-Mir-9-P10 None MIR-9 CUUUGGU None None Scaffold27 1664994 1665054 - Pancrustacea Bilateria No 1 1
Gpa-Mir-9-P11 None MIR-9 CUUUGGU None None Scaffold60 384436 384498 - Neoptera Bilateria Unknown 1
Gpa-Mir-9-P12-v1 None MIR-9 AAAGCUA None None Scaffold60 382326 382387 - Neoptera Bilateria No 1 1
Gpa-Mir-9-P12-v2 None MIR-9 UAAAGCU None None Scaffold60 382326 382387 - Neoptera Bilateria No 1 1
Gpa-Mir-9-P13 None MIR-9 CUUUGGU None None Scaffold60 382083 382145 - Neoptera Bilateria No 1
Gpa-Mir-10-P1 None MIR-10 CCCUGUA None None JMRQ01006282 198124 198183 - Bilateria Eumetazoa No 1
Gpa-Mir-10-P2 None MIR-10 ACCCGUA None None Scaffold60 1061480 1061540 + Bilateria Eumetazoa No
Gpa-Mir-10-P3 None MIR-10 CCCUGAG None None Scaffold60 1062704 1062763 + Bilateria Eumetazoa No
Gpa-Mir-10-P4 None MIR-10 AAGCUCG None None JMRQ01006282 139879 139971 + Protostomia Eumetazoa No 1
Gpa-Mir-12 None MIR-12 GAGUAUU None None Scaffold19 1474288 1474372 + Protostomia Protostomia No 1 1
Gpa-Mir-14 None MIR-14 CAGUCUU None None Scaffold360 74590 74661 - Neoptera Neoptera No 1
Gpa-Mir-22-P2 None MIR-22 AGCUGCC None None Scaffold338 26389 26451 + Bilateria Bilateria No 1
Gpa-Mir-29-P1 None MIR-29 AGCACCA None None Scaffold4 437704 437790 - Bilateria Bilateria No 1 1
Gpa-Mir-29-P2g None MIR-29 AGCACCA None None Scaffold125 392521 392589 - Neoptera Bilateria No
Gpa-Mir-29-P2h None MIR-29 AGCACCA None None Scaffold391 34785 34867 - Neoptera Bilateria No
Gpa-Mir-31-P1 None MIR-31 GGCAAGA None None Scaffold11 1615018 1615090 + Glossinidae + Drosophilidae Bilateria No 1
Gpa-Mir-31-P2a None MIR-31 GGCAAGA None None Scaffold133 89437 89510 + G. pallidipes Bilateria Unknown
Gpa-Mir-31-P2b None MIR-31 GGCAAGA None None Scaffold133 89437 89510 + G. pallidipes Bilateria Unknown
Gpa-Mir-33 None MIR-33 UGCAUUG None None Scaffold27 1646314 1646379 + Bilateria Bilateria No 1
Gpa-Mir-34 None MIR-34 GGCAGUG None None Scaffold190 182044 182108 + Bilateria Bilateria No 1
Gpa-Mir-67-P12-v1 None MIR-67 CACAACC None None Scaffold68 383021 383084 + G. pallidipes Protostomia No 1
Gpa-Mir-67-P12-v2 None MIR-67 ACAACCU None None Scaffold68 383021 383084 + G. pallidipes Protostomia No 1
Gpa-Mir-67-P13-v1 None MIR-67 CACAACC None None Scaffold50 84500 84565 + G. pallidipes Protostomia No 1 1
Gpa-Mir-67-P13-v2 None MIR-67 ACAACCU None None Scaffold50 84500 84565 + G. pallidipes Protostomia No 1 1
Gpa-Mir-76 None MIR-76 UCGUUGU None None Scaffold89 68721 68782 - Nephrozoa Nephrozoa No 1
Gpa-Mir-87-P2-v1 None MIR-87 UGAGCAA None None Scaffold60 202315 202381 + Protostomia Protostomia No 1
Gpa-Mir-87-P2-v2 None MIR-87 GAGCAAA None None Scaffold60 202315 202381 + Protostomia Protostomia No 1
Gpa-Mir-92-o62 None MIR-92 AUUGCAC None None Scaffold35 40492 40554 + G. pallidipes Bilateria No 1 1
Gpa-Mir-92-P3 None MIR-92 AUUGCAC None None Scaffold58 1279284 1279346 + Pancrustacea Bilateria No 1
Gpa-Mir-92-P4 None MIR-92 AUUGCAC None None Scaffold58 1294167 1294231 + Pancrustacea Bilateria No 1
Gpa-Mir-96-P2 None MIR-96 UUGGCAC None None Scaffold117 224425 224487 + Bilateria Bilateria Unknown 1
Gpa-Mir-96-P3 None MIR-96 AUGGCAC None None Scaffold45 994006 994084 + Bilateria Bilateria No 1
Gpa-Mir-124 None MIR-124 AAGGCAC None None Scaffold98 1265603 1265662 - Bilateria Bilateria No 1
Gpa-Mir-133 None MIR-133 UGGUCCC None None Scaffold39 807489 807551 + Bilateria Bilateria No 1
Gpa-Mir-137 None MIR-137 AUUGCUU None None Scaffold10 2419386 2419446 + Bilateria Bilateria No 1
Gpa-Mir-184 None MIR-184 GGACGGA None None Scaffold213 299028 299089 + Nephrozoa Nephrozoa No 1
Gpa-Mir-190 None MIR-190 GAUAUGU None None Scaffold0 471097 471159 + Bilateria Bilateria No 1
Gpa-Mir-193-P1 None MIR-193 ACUGGCC None None Scaffold29 988353 988437 - Bilateria Bilateria No
Gpa-Mir-210-v1 None MIR-210 UGUGCGU None None Scaffold150 167190 167247 + Bilateria Bilateria No 1
Gpa-Mir-210-v2 None MIR-210 UUGUGCG None None Scaffold150 167190 167247 + Bilateria Bilateria No 1
Gpa-Mir-216-P1 None MIR-216 AAUAUCA None None Scaffold19 1470953 1471009 + Nephrozoa Nephrozoa No
Gpa-Mir-219 None MIR-219 GAUUGUC None None Scaffold8 1087959 1088022 - Bilateria Bilateria No 1
Gpa-Mir-252-P2 None MIR-252 UAAGUAC None None Scaffold180 524239 524306 + Bilateria Bilateria No 1
Gpa-Mir-275 None MIR-275 CAGGUAC None None Scaffold315 241102 241168 + Arthropoda Arthropoda No 1 1
Gpa-Mir-276-P1 None MIR-276 AGGAACU None None Scaffold69 987274 987339 - Diptera Arthropoda No 1
Gpa-Mir-276-P2 None MIR-276 AGGAACU None None Scaffold69 779761 779821 - Diptera Arthropoda No 1 1
Gpa-Mir-277 None MIR-277 AAAUGCA None None Scaffold190 179087 179153 + Protostomia Protostomia No 1 1
Gpa-Mir-278 None MIR-278 CGGACGA None None Scaffold50 555937 555999 + Bilateria Bilateria No
Gpa-Mir-279-P1 None MIR-279 GACUAGA None None Scaffold26 90609 90682 + Pancrustacea Protostomia No 1
Gpa-Mir-279-P2 None MIR-279 GACUAGA None None Scaffold54 1350149 1350215 + Pancrustacea Protostomia No
Gpa-Mir-279-P3 None MIR-279 GACUAGA None None Scaffold54 1375135 1375199 + Pancrustacea Protostomia No 1
Gpa-Mir-281-P1-v1 None MIR-281 AAGAGAG None None Scaffold293 205475 205541 + Glossinidae + Drosophilidae Nephrozoa No 1
Gpa-Mir-281-P1-v2 None MIR-281 AGAGAGC None None Scaffold293 205476 205540 + Glossinidae + Drosophilidae Nephrozoa No 1
Gpa-Mir-281-P2-v1 None MIR-281 GUCAUGG None None Scaffold293 205739 205817 + Glossinidae + Drosophilidae Nephrozoa No 1
Gpa-Mir-281-P2-v2 None MIR-281 AGAGAGC None None Scaffold293 205740 205816 + Glossinidae + Drosophilidae Nephrozoa No 1
Gpa-Mir-282 None MIR-282 AGCCUCU None None Scaffold8 2954604 2954683 - Pancrustacea Pancrustacea No 1 1
Gpa-Mir-284 None MIR-284 CUGGAAU None None Scaffold36 918599 918678 + Glossinidae + Drosophilidae Glossinidae + Drosophilidae No 1
Gpa-Mir-305 None MIR-305 UUGUACU None None Scaffold315 241261 241320 + Cryptovermes Cryptovermes No
Gpa-Mir-306 None MIR-306 CAGGUAC None None Scaffold60 383833 383895 - Neoptera Neoptera No 1
Gpa-Mir-315 None MIR-315 UUUGAUU None None Scaffold14 123471 123535 - Nephrozoa Nephrozoa Unknown 1
Gpa-Mir-316 None MIR-316 GUCUUUU None None Scaffold164 76840 76898 + Pancrustacea Pancrustacea No 1
Gpa-Mir-317 None MIR-317 GAACACA None None Scaffold190 146205 146290 + Protostomia Protostomia No
Gpa-Mir-375 None MIR-375 UUGUUCG None None Scaffold48 719528 719595 + Nephrozoa Nephrozoa No 1
Gpa-Mir-927-P1-v1 None MIR-927 UUAGAAU None None Scaffold91 322631 322691 - Neoptera Neoptera No 1
Gpa-Mir-927-P1-v2 None MIR-927 UUUAGAA None None Scaffold91 322630 322692 - Neoptera Neoptera No 1
Gpa-Mir-929 None MIR-929 AAUUGAC None None Scaffold28 1414131 1414190 - Neoptera Neoptera No
Gpa-Mir-932 None MIR-932 CAAUUCC None None Scaffold102 630601 630664 - Neoptera Neoptera No
Gpa-Mir-956-v1 None MIR-956 UUCGAGA None None Scaffold41 1675605 1675724 - Glossinidae + Drosophilidae Glossinidae + Drosophilidae No
Gpa-Mir-956-v2 None MIR-956 UCGAGAC None None Scaffold41 1675605 1675724 - Glossinidae + Drosophilidae Glossinidae + Drosophilidae No
Gpa-Mir-957 None MIR-957 GAAACCG None None Scaffold7 2697993 2698057 - Diptera Diptera No 1
Gpa-Mir-965 None MIR-965 AAGCGUA None None Scaffold373 109288 109379 - Pancrustacea Pancrustacea No 1 1 1
Gpa-Mir-970 None MIR-970 CAUAAGA None None Scaffold42 273921 273989 + Aparaglossata Aparaglossata No
Gpa-Mir-971 None MIR-971 UGGUGUU None None Scaffold16 347672 347733 + Neoptera Neoptera No 1
Gpa-Mir-987 None MIR-987 AAAGUAA None None Scaffold323 87572 87636 + Glossinidae + Drosophilidae Glossinidae + Drosophilidae Unknown 1
Gpa-Mir-988 None MIR-988 CCCUUGU None None Scaffold61 660052 660108 - Panorpida Panorpida No 1
Gpa-Mir-989 None MIR-989 GUGAUGU None None Scaffold477 52155 52383 + Endopterygota Endopterygota No
Gpa-Mir-999 None MIR-999 GUUAACU None None Scaffold168 823176 823236 + Diptera Diptera No 1 1
Gpa-Mir-1000 None MIR-1000 UAUUGUC None None Scaffold138 468598 468663 + Neoptera Neoptera No 1 1
Gpa-Mir-1175 None MIR-1175 GAGAUUC None None Scaffold201 126261 126372 + Protostomia Protostomia No 1 1
Gpa-Mir-2001 None MIR-2001 UUGUGAC None None Scaffold4 2050284 2050374 - Bilateria Bilateria No 1
Gpa-Novel-1 None GPA-NOVEL-1 AAGUAGU None None Scaffold194 173208 173272 - G. pallidipes G. pallidipes No
Gpa-Novel-2 None GPA-NOVEL-2 AAUGCCC None None Scaffold29 988131 988195 - G. pallidipes G. pallidipes No
Gpa-Novel-3 None GPA-NOVEL-3 GAUCUUC None None Scaffold55 42450 42510 - G. pallidipes G. pallidipes No 1

Download sequences for: precursor | 5p | 3p | mature | star | mature/star | loop | extend_pre | all

Download genome coordinates (GFF format)

Download count matrix