MirGeneDB 3.0
107 Ciona intestinalis microRNA genes
Sort by genome coordinates Motifs Tissue expression
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MirGeneDB ID ▲ MiRBase ID Family Seed 5p accession 3p accession Chromosome Start End Strand Node of origin (locus) Node of origin (family) 3' NTU  UG  UGUG CNNC C- C- C- C- C- C- C- C- C- C- Ga La La
Cin-Let-7-P1 cin-let-7d LET-7 GAGGUAG MIMAT0006089 MIMAT0015250 10 1022546 1022607 - Olfactores Bilateria No 1
Cin-Let-7-P2o1-v1 cin-let-7a-1 LET-7 GAGGUAG MIMAT0006086 MIMAT0015247 4 2157422 2157502 + C. intestinalis Bilateria Yes 1
Cin-Let-7-P2o1-v2 cin-let-7a-1 LET-7 UGAGGUA MIMAT0006086 MIMAT0015247 4 2157421 2157502 + C. intestinalis Bilateria Yes 1 1
Cin-Let-7-P2o2 cin-let-7f LET-7 GAGGUAG MIMAT0016842 MIMAT0016843 4 2157552 2157624 + C. intestinalis Bilateria Yes 1
Cin-Let-7-P2o3 cin-let-7b LET-7 UGAGGUA MIMAT0006087 MIMAT0015249 4 2157948 2158018 + C. intestinalis Bilateria Yes 1
Cin-Let-7-P2o4 cin-let-7c LET-7 GAGGUAG MIMAT0006088 None 4 2158141 2158206 + C. intestinalis Bilateria Yes 1
Cin-Let-7-P2o5 cin-let-7a-2 LET-7 GAGGUAG MIMAT0006086 MIMAT0015248 4 2158340 2158414 + C. intestinalis Bilateria Yes 1
Cin-Mir-1 cin-mir-1 MIR-1 GGAAUGU MIMAT0016392 MIMAT0016393 1 8400375 8400469 + Bilateria Bilateria No 1
Cin-Mir-7 cin-mir-7 MIR-7 GGAAGAC MIMAT0006091 MIMAT0015251 1 1104842 1104894 + Bilateria Bilateria No 1
Cin-Mir-8-P1 cin-mir-200 MIR-8 AAUACUG MIMAT0015263 MIMAT0006110 HT000325.1 8346 8403 + Chordata Nephrozoa No 1
Cin-Mir-8-P2 cin-mir-141 MIR-8 AACACUG MIMAT0015260 MIMAT0006103 HT000325.1 8710 8764 + Chordata Nephrozoa No 1 1
Cin-Mir-9 cin-mir-9 MIR-9 CUUUGGU MIMAT0016396 None 5 4897034 4897089 + Bilateria Bilateria No 1
Cin-Mir-10-P2 cin-mir-1473 MIR-10 CAAGCUC MIMAT0015245 MIMAT0006067 10 1023005 1023063 - Bilateria Eumetazoa No 1
Cin-Mir-10-P3 cin-mir-125 MIR-10 CCCUGAG MIMAT0016405 MIMAT0016406 10 1022411 1022462 - Bilateria Eumetazoa No
Cin-Mir-15-P1 cin-mir-15 MIR-15 AGCAGCA MIMAT0016397 MIMAT0016398 7 3345446 3345500 - Olfactores Olfactores Yes 1
Cin-Mir-15-P2 cin-mir-4059 MIR-15 AGCAGCA MIMAT0016606 MIMAT0016607 7 3345089 3345142 - Olfactores Olfactores No 1
Cin-Mir-29-o1 cin-mir-29 MIR-29 AGCACCA MIMAT0016401 MIMAT0016402 12 4741540 4741600 + C. intestinalis Bilateria No 1
Cin-Mir-31 cin-mir-31 MIR-31 GGCAAGA MIMAT0006092 None HT000111.1 89204 89265 - Bilateria Bilateria No 1 1
Cin-Mir-33 cin-mir-33 MIR-33 UAAUGUG MIMAT0006093 None HT000187.1 34845 34901 - Bilateria Bilateria No 1 1
Cin-Mir-34 cin-mir-34 MIR-34 GGCAGUG MIMAT0006094 MIMAT0015252 10 3230582 3230671 - Bilateria Bilateria No 1
Cin-Mir-92-o69 cin-mir-92b MIR-92 AUUGCAC MIMAT0015254 MIMAT0006097 1 1925379 1925436 + C. intestinalis Bilateria No 1
Cin-Mir-92-o70 cin-mir-92e MIR-92 AUUGCAC MIMAT0016421 MIMAT0016422 1 1925679 1925732 + C. intestinalis Bilateria No 1
Cin-Mir-92-o71 cin-mir-4038 MIR-92 AUUGCAC MIMAT0016565 MIMAT0016566 1 1926125 1926182 + C. intestinalis Bilateria No
Cin-Mir-92-o72 cin-mir-92a MIR-92 AUUGCAC MIMAT0015253 MIMAT0006096 3 884650 884701 + C. intestinalis Bilateria No 1
Cin-Mir-92-o73 cin-mir-92d MIR-92 AUUGCAC MIMAT0016423 MIMAT0016424 3 884985 885041 + C. intestinalis Bilateria No 1
Cin-Mir-92-o74 cin-mir-92c MIR-92 AUUGCAC MIMAT0015255 MIMAT0006098 3 885439 885494 + C. intestinalis Bilateria No 1
Cin-Mir-92-o75 cin-mir-367 MIR-92 AUUGCAC MIMAT0016415 MIMAT0016416 HT000037.1 5191 5250 - C. intestinalis Bilateria No 1
Cin-Mir-92-o76 cin-mir-4009c MIR-92 AUUGCAC None MIMAT0016505 HT000037.1 5092 5146 - C. intestinalis Bilateria No 1 1
Cin-Mir-92-o77 cin-mir-4009a MIR-92 AUUGCAC MIMAT0016501 MIMAT0016502 HT000037.1 4978 5031 - C. intestinalis Bilateria No
Cin-Mir-92-o78 cin-mir-4009b MIR-92 AUUGCAC MIMAT0016503 MIMAT0016504 HT000037.1 4884 4935 - C. intestinalis Bilateria No 1
Cin-Mir-96-P1 cin-mir-96 MIR-96 UUGGCAC MIMAT0016403 MIMAT0016404 HT000094.1 542651 542705 - Bilateria Bilateria No 1
Cin-Mir-96-P2 cin-mir-182 MIR-96 UUGGCAA MIMAT0016411 MIMAT0016412 HT000094.1 542170 542234 - Bilateria Bilateria No 1
Cin-Mir-96-P3 cin-mir-183 MIR-96 AUGGCAC MIMAT0006107 MIMAT0015262 HT000094.1 543640 543692 - Bilateria Bilateria No 1 1
Cin-Mir-124-P7 cin-mir-124-2 MIR-124 AAGGCAC MIMAT0015257 MIMAT0006100 7 4969845 4969902 - C. intestinalis Bilateria No 1 1
Cin-Mir-124-P8 cin-mir-124-1 MIR-124 AAGGCAC MIMAT0015256 MIMAT0006100 7 4969705 4969762 - C. intestinalis Bilateria No 1 1
Cin-Mir-126-v1 cin-mir-126 MIR-126 CGUACCG MIMAT0015258 MIMAT0006101 1 5485228 5485289 - Olfactores Olfactores No 1 1
Cin-Mir-126-v2 cin-mir-126 MIR-126 GUACCGU MIMAT0015258 MIMAT0006101 1 5485228 5485289 - Olfactores Olfactores No 1 1
Cin-Mir-133 cin-mir-133 MIR-133 UUGGUCC MIMAT0015259 MIMAT0006102 1 8400633 8400695 + Bilateria Bilateria No 1
Cin-Mir-135-P7 cin-mir-132-2 MIR-135 AUGGCUU MIMAT0016425 None HT000116.1 70787 70845 + C. intestinalis Chordata No 1 1
Cin-Mir-135-P8 cin-mir-135 MIR-135 AUGGCUU MIMAT0016409 MIMAT0016410 HT000116.1 71231 71286 + C. intestinalis Chordata No 1
Cin-Mir-153 cin-mir-153 MIR-153 UGCAUAG MIMAT0015261 MIMAT0006104 5 1106327 1106387 + Bilateria Bilateria No
Cin-Mir-184 cin-mir-184 MIR-184 GGACGGA None MIMAT0006108 11 4043133 4043209 - Nephrozoa Nephrozoa No 1 1
Cin-Mir-196 cin-mir-196 MIR-196 AGGUAGU MIMAT0016413 MIMAT0016414 7 2713377 2713429 - Olfactores Olfactores Unknown 1
Cin-Mir-219 cin-mir-219 MIR-219 GAUUGUC MIMAT0006113 MIMAT0015264 7 4370293 4370349 - Bilateria Bilateria Unknown 1 1
Cin-Mir-281 cin-mir-281 MIR-281 GUCAUGG MIMAT0015265 MIMAT0006114 HT000062.1 205034 205088 + Nephrozoa Nephrozoa No 1 1
Cin-Mir-375 cin-mir-375 MIR-375 UUGUUCG MIMAT0016417 MIMAT0016418 7 372868 372952 - Nephrozoa Nephrozoa No 1
Cin-Mir-1495 None MIR-1495 GUGUAAU None None 6 607126 607179 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-1497 cin-mir-1497 MIR-1497 UGAAGAA MIMAT0015246 MIMAT0006068 9 5852709 5852773 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-1502-P1 cin-mir-1502d MIR-1502 GAACUUU MIMAT0016493 MIMAT0016494 3 568849 568908 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-1502-P2 cin-mir-1502b MIR-1502 GAACUUU MIMAT0016489 MIMAT0016490 3 569083 569140 + C. intestinalis C. intestinalis No 1
Cin-Mir-1502-P3 cin-mir-1502a MIR-1502 UGAACUU MIMAT0016487 MIMAT0016488 3 569197 569256 + C. intestinalis C. intestinalis No 1
Cin-Mir-1502-P4 cin-mir-1502c MIR-1502 GAACUUU MIMAT0016491 MIMAT0016492 3 570975 571033 + C. intestinalis C. intestinalis No 1
Cin-Mir-3598 cin-mir-3598 MIR-3598 CACAGUG MIMAT0016399 MIMAT0016400 14 3281620 3281678 - C. intestinalis C. intestinalis No 1
Cin-Mir-4010-P1 cin-mir-4010 MIR-4010 ACGUAUG None MIMAT0016507 3 3427170 3427233 + C. intestinalis C. intestinalis No 1
Cin-Mir-4010-P2 cin-mir-4010 MIR-4010 ACGUAUG None MIMAT0016507 3 3427170 3427233 + C. intestinalis C. intestinalis No 1
Cin-Mir-4011-P1 cin-mir-4011a MIR-4011 ACAGUGG MIMAT0016508 MIMAT0016509 HT000276.1 10121 10182 - C. intestinalis C. intestinalis No 1
Cin-Mir-4011-P2 cin-mir-4011b MIR-4011 CACAGUG MIMAT0016510 MIMAT0016511 HT000354.1 4673 4729 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4013-P1 cin-mir-4013a MIR-4013 GACUUGU MIMAT0016514 MIMAT0016515 HT000174.1 447280 447335 - C. intestinalis C. intestinalis No 1
Cin-Mir-4013-P2 cin-mir-4013b MIR-4013 AGGCUGC MIMAT0016516 MIMAT0016517 HT000174.1 385914 385966 + C. intestinalis C. intestinalis No 1
Cin-Mir-4014-P1 cin-mir-4014-2 MIR-4014 UACAGAA MIMAT0016976 MIMAT0016519 12 3135494 3135548 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4014-P2 cin-mir-4014-1 MIR-4014 UACAGAA MIMAT0016518 MIMAT0016519 12 3135786 3135842 + C. intestinalis C. intestinalis No 1
Cin-Mir-4015-P1 cin-mir-4015-2 MIR-4015 GAUAGGU MIMAT0016520 MIMAT0016521 HT000065.1 63426 63477 + C. intestinalis C. intestinalis No 1 1 1
Cin-Mir-4015-P2 cin-mir-4015-1 MIR-4015 GAUAGGU MIMAT0016520 MIMAT0016521 HT000065.1 63426 63477 + C. intestinalis C. intestinalis No 1 1 1
Cin-Mir-4017-P1 cin-mir-4033 MIR-4017 AAGUGCA MIMAT0016555 MIMAT0016556 HT000042.1 67380 67435 + C. intestinalis C. intestinalis No 1
Cin-Mir-4017-P2a cin-mir-4017-1 MIR-4017 AAGUGCA MIMAT0016524 MIMAT0016525 HT000042.1 68643 68699 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4017-P2b cin-mir-4017-2 MIR-4017 AAGUGCA MIMAT0016524 MIMAT0016525 HT000042.1 68643 68699 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4018-P1 cin-mir-4018a MIR-4018 GGAACAU MIMAT0016528 MIMAT0016529 3 568964 569018 + C. intestinalis C. intestinalis No 1
Cin-Mir-4018-P2 cin-mir-4018b MIR-4018 GGAACAU MIMAT0016530 MIMAT0016531 3 569570 569648 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4029 cin-mir-4029 MIR-4029 AAGUGCA MIMAT0016547 MIMAT0016548 14 3195082 3195137 - C. intestinalis C. intestinalis No 1
Cin-Mir-4030 cin-mir-4030 MIR-4030 AAGUGCA MIMAT0016549 MIMAT0016550 3 4477480 4477534 - C. intestinalis C. intestinalis No 1
Cin-Mir-4031 cin-mir-4031 MIR-4031 CAUGUAC MIMAT0016551 MIMAT0016552 HT000052.1 65613 65668 - C. intestinalis C. intestinalis No 1
Cin-Mir-4034 cin-mir-4034 MIR-4034 CACAGUG MIMAT0016557 MIMAT0016558 14 3281763 3281819 - C. intestinalis C. intestinalis No
Cin-Mir-4036 cin-mir-4036 MIR-4036 GUGCAAA MIMAT0016561 MIMAT0016562 HT000034.1 635404 635456 + C. intestinalis C. intestinalis No 1
Cin-Mir-4037 cin-mir-4037 MIR-4037 CAAUUGC MIMAT0016563 MIMAT0016564 HT001175.1 12218 12275 - C. intestinalis C. intestinalis No 1
Cin-Mir-4040 cin-mir-4040 MIR-4040 CGUCUUU MIMAT0016569 MIMAT0016570 11 4184663 4184717 - C. intestinalis C. intestinalis No 1
Cin-Mir-4043 cin-mir-4043 MIR-4043 UGCAUAG MIMAT0016575 MIMAT0016576 14 1118678 1118734 - C. intestinalis C. intestinalis No 1 1
Cin-Mir-4044 cin-mir-4044 MIR-4044 GAAAUAG MIMAT0016577 MIMAT0016578 HT000127.1 131957 132015 - C. intestinalis C. intestinalis No 1 1
Cin-Mir-4045 cin-mir-4045 MIR-4045 CACAAUG MIMAT0016579 MIMAT0016580 HT000105.1 43955 44009 + C. intestinalis C. intestinalis No 1
Cin-Mir-4046 cin-mir-4046 MIR-4046 CAGUAAC MIMAT0016581 MIMAT0016582 HT000823.1 87428 87487 + C. intestinalis C. intestinalis No 1
Cin-Mir-4047 cin-mir-4047 MIR-4047 CAGACAC MIMAT0016583 MIMAT0016584 1 4157238 4157294 - C. intestinalis C. intestinalis No 1 1
Cin-Mir-4048 cin-mir-4048 MIR-4048 CACCUUG MIMAT0016585 MIMAT0016586 13 1257512 1257570 - C. intestinalis C. intestinalis No
Cin-Mir-4050 cin-mir-4050 MIR-4050 AGGUAAA MIMAT0016589 MIMAT0016590 5 3019437 3019494 - C. intestinalis C. intestinalis No 1
Cin-Mir-4052 cin-mir-4052 MIR-4052 CACUUGA MIMAT0016593 MIMAT0016594 HT001175.1 12120 12173 - C. intestinalis C. intestinalis No 1
Cin-Mir-4053 cin-mir-4053 MIR-4053 AGUACGU MIMAT0016595 MIMAT0016596 HT000098.1 146779 146840 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4054 cin-mir-4054 MIR-4054 AUGAUUG MIMAT0016597 MIMAT0016598 10 3226199 3226256 - C. intestinalis C. intestinalis No 1
Cin-Mir-4055 cin-mir-4055 MIR-4055 AUUCGGA MIMAT0016599 MIMAT0016600 7 633871 633928 - C. intestinalis C. intestinalis No 1
Cin-Mir-4057 cin-mir-4057 MIR-4057 UUGCUAC MIMAT0016603 MIMAT0016604 8 5547196 5547250 - Chordata Chordata No 1
Cin-Mir-4060 cin-mir-4060 MIR-4060 UUUCACU MIMAT0016608 MIMAT0016609 HT000174.1 91188 91245 + C. intestinalis C. intestinalis No 1
Cin-Mir-4061 cin-mir-4061 MIR-4061 ACACUCU MIMAT0016610 MIMAT0016611 HT001175.1 12325 12379 - C. intestinalis C. intestinalis No 1
Cin-Mir-4062-P1 cin-mir-4068 MIR-4062 AUGCUGA MIMAT0016624 MIMAT0016625 5 996178 996244 + C. intestinalis C. intestinalis No 1 1
Cin-Mir-4062-P2 cin-mir-4062 MIR-4062 AUGCUGU MIMAT0016612 MIMAT0016613 5 996382 996447 + C. intestinalis C. intestinalis No 1
Cin-Mir-4063 cin-mir-4063 MIR-4063 ACACCUU MIMAT0016614 MIMAT0016615 13 1256492 1256550 - C. intestinalis C. intestinalis No 1 1
Cin-Mir-4065 cin-mir-4065 MIR-4065 AUCGACA MIMAT0016618 MIMAT0016619 1 4176956 4177027 - C. intestinalis C. intestinalis No 1 1
Cin-Mir-4067 cin-mir-4067 MIR-4067 AAGGAAC MIMAT0016622 MIMAT0016623 1 1240455 1240513 + C. intestinalis C. intestinalis No 1
Cin-Mir-4070 cin-mir-4070 MIR-4070 CGAAUGU MIMAT0016628 MIMAT0016629 5 662540 662600 + C. intestinalis C. intestinalis No 1
Cin-Mir-4071 cin-mir-4071 MIR-4071 UUGCUCU MIMAT0016630 MIMAT0016631 9 4379240 4379291 - C. intestinalis C. intestinalis No 1
Cin-Mir-4073 cin-mir-4073 MIR-4073 AGGAUGU MIMAT0016634 MIMAT0016635 HT000823.1 87062 87115 + C. intestinalis C. intestinalis No 1
Cin-Mir-4076 cin-mir-4076 MIR-4076 AACGAGU MIMAT0016640 MIMAT0016641 1 3976074 3976131 + C. intestinalis C. intestinalis No 1
Cin-Mir-4078 cin-mir-4078 MIR-4078 UCACUUU MIMAT0016645 MIMAT0016646 HT000174.1 91084 91136 + C. intestinalis C. intestinalis No 1
Cin-Mir-4079 cin-mir-4079 MIR-4079 GCUUCAU MIMAT0016647 MIMAT0016648 7 634173 634224 - C. intestinalis C. intestinalis No 1
Cin-Mir-4081 cin-mir-4081 MIR-4081 AGUUCAA MIMAT0016651 MIMAT0016652 2 6103234 6103286 - C. intestinalis C. intestinalis No 1
Cin-Mir-4085 cin-mir-4085 MIR-4085 CGCACGU MIMAT0016659 MIMAT0016660 5 663501 663559 + C. intestinalis C. intestinalis No 1
Cin-Mir-4086 cin-mir-4086 MIR-4086 AUUUUGA None MIMAT0016661 5 662410 662467 + C. intestinalis C. intestinalis No
Cin-Mir-4093 cin-mir-4093 MIR-4093 UGCAACA MIMAT0016672 MIMAT0016673 1 3128495 3128562 + C. intestinalis C. intestinalis No 1
Cin-Mir-4127 cin-mir-4127 MIR-4127 ACAGCUC MIMAT0016721 MIMAT0016722 5 2473269 2473324 + C. intestinalis C. intestinalis No 1 1 1
Cin-Mir-5600 cin-mir-5600 MIR-5600 CGAAACC MIMAT0022323 MIMAT0022324 7 1895997 1896062 - C. intestinalis C. intestinalis No 1
Cin-Novel-1 None CIN-NOVEL-1 AGGCAGC None None HT001221.1 6546 6600 - C. intestinalis C. intestinalis No 1

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